View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_10 (Length: 564)
Name: NF7311_high_10
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 10 - 465
Target Start/End: Complemental strand, 2637927 - 2637454
Alignment:
| Q |
10 |
ttattcattattcttaccaatcgagttaagtttacgtgaacaacatgttacactctaatgaagggtcccataaactttgaaaaattacttagttttttaa |
109 |
Q |
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| T |
2637927 |
ttattcattatcgttaccaaccgagttaagtttacgtgtacaacatgttacactctaatgaagggtcccagaaactttaaaaaattacttagttttttaa |
2637828 |
T |
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| Q |
110 |
ttgaaacttcaaaatannnnnnnctaaagctcactagctgacagtaaaatgttatttaagcagaaaaagtttacatgatattggagcattatacatggtt |
209 |
Q |
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| T |
2637827 |
ttgaaacttcaa--tatttttttctaaagctcactagctggcagtaaaatgttatttaagcagaaaaagtttacatgatattggagcattatacatggtt |
2637730 |
T |
|
| Q |
210 |
atatacattgaatagatcaaaactagtgatatatacaaaagagaaatcgaaatcaaatacaagtaagcaaaaggttgattattccaaccacccaacttat |
309 |
Q |
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| T |
2637729 |
atatacattgaatagatcaaaactagtgatatatacaaaagagaaatcgaaatcaaatacaagtaagcaaaaggttgattattccaaccacccaacttat |
2637630 |
T |
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| Q |
310 |
gtttgacctctgtggcatctc---------------acatgatgactttattcagtgaattgaaaaagat-----ttgagaagccnnnnnnnnnnnnnnn |
389 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2637629 |
gtttgacctctgtggcatctcactatctaaattaatacatgatgactttattcagtgaattgaaaaagattaaaattgagaagcctttttgttttttgtt |
2637530 |
T |
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| Q |
390 |
nnggctcacaaaagtaaattcgtagtcaacacaatgatatttttacacttataatttcctaatcttcattgatcac |
465 |
Q |
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| T |
2637529 |
ttggctcacaaaagtaaattcttagtcaacacaatgatattgttacacttataatttcataatcttcattgatcac |
2637454 |
T |
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