View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_high_19 (Length: 431)

Name: NF7311_high_19
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_high_19
NF7311_high_19
[»] chr1 (10 HSPs)
chr1 (111-414)||(1794134-1794440)
chr1 (21-338)||(2020975-2021293)
chr1 (27-185)||(3374067-3374225)
chr1 (26-183)||(3363966-3364123)
chr1 (29-185)||(3380195-3380351)
chr1 (73-183)||(6599646-6599756)
chr1 (113-313)||(2007930-2008130)
chr1 (89-253)||(3342695-3342859)
chr1 (27-155)||(3366361-3366489)
chr1 (73-185)||(4333561-4333673)
[»] chr2 (5 HSPs)
chr2 (28-185)||(20936091-20936248)
chr2 (28-185)||(20954332-20954489)
chr2 (26-185)||(39275231-39275390)
chr2 (26-54)||(20924479-20924507)
chr2 (113-157)||(20924566-20924610)
[»] chr5 (1 HSPs)
chr5 (113-183)||(17971163-17971233)
[»] chr4 (2 HSPs)
chr4 (113-182)||(21238956-21239025)
chr4 (224-292)||(21239067-21239135)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 111 - 414
Target Start/End: Original strand, 1794134 - 1794440
Alignment:
Q  111 atatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgt 210  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1794134 atatctgaattagattttatcagatttctacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcatacgtcggatcagaggtggtgt 1794233  T
Q  211 taaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1794234 taaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcgtcataatgttttttattcaactcttaaatgcatat 1794333  T
Q  311 taccatttgtctcttt---ttaatgaaccaagaatcaagaatgctcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattct 407  Q
    ||||||||||||||||   |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1794334 taccatttgtctctttatattaatgaaccaagaataaagaatggtcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattct 1794433  T
Q  408 acaatgt 414  Q
    |||||||    
T  1794434 acaatgt 1794440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 338
Target Start/End: Original strand, 2020975 - 2021293
Alignment:
Q  21 cctgactcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaat 120  Q
    |||| |||||||||||||||| || |||||| ||  ||| ||| |||||||  |||| ||| |||||| || || ||||||| |||||  | | ||||||    
T  2020975 cctgcctcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaat 2021074  T
Q  121 tagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgttaaaattatt 220  Q
    |||||||| | || ||| ||||||| ||||| ||| | |||||| | |||   |||||||||| ||   ||||||||||  || || ||| | || |  |    
T  2021075 tagattttttgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtcagaactgct 2021174  T
Q  221 gcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatattacca-tttg 319  Q
    ||  |||||||| ||||| | ||||||||||||  ||||   || |||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  2021175 gcgattcaagagagcctccgcacaagctgaagttgtttaccttggggaagtctcttcatgatgttttttattcaactcttaaatgtatattgccattttg 2021274  T
Q  320 tctctttttaatgaaccaa 338  Q
    | ||||||| |||| ||||    
T  2021275 tttctttttcatgatccaa 2021293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 3374067 - 3374225
Alignment:
Q  27 tcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagatt 126  Q
    |||||||||||||||||||||||||| || |||||||  |||||   ||| | || ||||   ||||||||||||| |||||  | ||| ||||||||||    
T  3374067 tcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagatt 3374166  T
Q  127 ttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    ||||  ||||| |||||| |||||||||||| |||||| | |||| |||||||| ||||    
T  3374167 ttattcggtttctacttcgatattctcctgtgctagaaaagatgattgtgaagcatgtt 3374225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 3363966 - 3364123
Alignment:
Q  26 ctcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagat 125  Q
    |||||||||||||||| |||| |||||||  ||| | |  ||||| | |||||||| |||| ||||  ||||||||| |||    | |||||||||||||    
T  3363966 ctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattagat 3364065  T
Q  126 tttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctg 183  Q
    |||||||| ||| | ||| ||||||||||||| |||||| | |||| |||| ||||||    
T  3364066 tttatcagatttctgcttttatattctcctgtactagaaaagatgattgtggagcctg 3364123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 3380195 - 3380351
Alignment:
Q  29 ctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagatttt 128  Q
    |||||||||||||| |||||||||  | |||| ||  |||||  ||||||||| ||||   ||||||| ||||| |||||  | ||| ||||||||||||    
T  3380195 ctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatgacatctctggtatcaaatcggaattagatttt 3380294  T
Q  129 atcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    ||  ||||| ||||||| ||||||||| | |||||| | |||| |||||||| ||||    
T  3380295 attcggtttctacttctctattctcctatgctagaaaagatgattgtgaagcatgtt 3380351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 6599756 - 6599646
Alignment:
Q  73 gagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgac 172  Q
    ||||||||| |||| | ||||||||||||| |||||  | | |||| ||||| || ||||| ||| ||||||||||||||||||| ||||||   |||||    
T  6599756 gagtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatgac 6599657  T
Q  173 tgtgaagcctg 183  Q
    |||||| ||||    
T  6599656 tgtgaaacctg 6599646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 2007930 - 2008130
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgtta 212  Q
    |||||||||||||||||| || ||| |||||||  |||| ||||| |||||| | ||||  ||||||||   ||   |||| |||||  || || ||| |    
T  2007930 atctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaagatgagagtgaagcccaattttaacgttggatcgaagttgatgtca 2008029  T
Q  213 aaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatatta 312  Q
     |||| ||||  |||||||| ||||||| ||||||||||||  ||||   || |||||||| ||  | || |||||||||||||||||||||| ||||||    
T  2008030 gaattgttgcgattcaagagagcctcagcacaagctgaagttgtttaccttggggaagtctattggtgatattttttattcaactcttaaatgtatatta 2008129  T
Q  313 c 313  Q
    |    
T  2008130 c 2008130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 3342695 - 3342859
Alignment:
Q  89 gatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttca 188  Q
    |||||||||||||| |||||  | |||||||||||||||||||   ||| ||||||||||||||||||  |||||| | |||   ||||||||| || ||    
T  3342695 gatagatggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatgttcgtgaagcctattgca 3342794  T
Q  189 cacgtcggatcagaggtggtgttaaaattattgcagttcaagagggcctcaggacaagctgaagt 253  Q
     ||||| || | |||||  ||  |||| || | | ||||||||| || ||| |||||||||||||    
T  3342795 aacgtcagaactgaggtaatgacaaaactaattcggttcaagagagcatcaagacaagctgaagt 3342859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 3366361 - 3366489
Alignment:
Q  27 tcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagatt 126  Q
    |||||||||| | ||||||||||||| || |||||||  |||||  ||||||||| ||||   ||||||||||||| |||||  | ||| ||| ||||||    
T  3366361 tcctattgttcgtaagatatcttttcagggccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagatt 3366460  T
Q  127 ttatcaggtttttacttctatattctcct 155  Q
    ||||  ||||| ||||||  |||||||||    
T  3366461 ttattcggtttctacttcgctattctcct 3366489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 4333673 - 4333561
Alignment:
Q  73 gagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgac 172  Q
    ||||||||| ||||  |||||||||||||| |||||     ||||||||| |||| ||||| ||| |||||||||||||||  || |||||| | ||||     
T  4333673 gagtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgat 4333574  T
Q  173 tgtgaagcctgtt 185  Q
    |||||||||||||    
T  4333573 tgtgaagcctgtt 4333561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 20936091 - 20936248
Alignment:
Q  28 cctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattt 127  Q
    |||||||||||||| | ||||||||||  |||||||  |||||  ||||||||| ||||  |||||||||||||| |||||| | ||  |||||||||||    
T  20936091 cctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattggaattagattt 20936190  T
Q  128 tatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    |||||  ||| ||||||||||||||||||| |||||| | ||||||||||||||||||    
T  20936191 tatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctgtt 20936248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 20954332 - 20954489
Alignment:
Q  28 cctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattt 127  Q
    ||||||||||||||||||| ||||||| ||||||||  |||||   |||||||| ||||  ||| |||||||||| |||||  |  |  |||||||||||    
T  20954332 cctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttggaattagattt 20954431  T
Q  128 tatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    |||||  ||| ||||||||||||||||  | |||||| | |||||| |||||||||||    
T  20954432 tatcaaatttctacttctatattctcccatgctagaaaagatgactctgaagcctgtt 20954489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 39275231 - 39275390
Alignment:
Q  26 ctcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagat 125  Q
    |||||||||||||||||||| |||||| || |||||||  ||||||  ||| |||| |||| | |||| |||||||  ||| |  | |||||||||||||    
T  39275231 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 39275330  T
Q  126 tttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    |||||||  ||| | ||  | ||||||||| | |||||| | |||| |||||||||||||    
T  39275331 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgtt 39275390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 20924479 - 20924507
Alignment:
Q  26 ctcctattgttgggaagatatcttttcgg 54  Q
    |||||||||||||||||||||||||||||    
T  20924479 ctcctattgttgggaagatatcttttcgg 20924507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 20924566 - 20924610
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgt 157  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  20924566 atctgaattagattttatcagatttctacttctctattcacctgt 20924610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 17971163 - 17971233
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctg 183  Q
    ||||||||||||||| || || ||| |||||| |||||||||||| ||  || | ||||||||||||||||    
T  17971163 atctgaattagatttcattagatttctacttcaatattctcctgttcttcaaaagatgactgtgaagcctg 17971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 21238956 - 21239025
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcct 182  Q
    |||||| |||||||||||||| ||| |||||||  |||||||| |  ||||| | |||||||||||||||    
T  21238956 atctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatgactgtgaagcct 21239025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 21239067 - 21239135
Alignment:
Q  224 gttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttatt 292  Q
    ||||||||| || || ||| |||||||||| |||||  ||||||||| ||||||||||||  |||||||    
T  21239067 gttcaagagtgcatcgggagaagctgaagttatttaccatgtggaagactcttcataatgaattttatt 21239135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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