View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_high_2 (Length: 798)
Name: NF7311_high_2
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_2 |
 | |
|
| [»] scaffold1750 (1 HSPs) |
| | |
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Alignment Details
Target: chr4 (Bit Score: 469; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 20 - 592
Target Start/End: Original strand, 35678017 - 35678589
Alignment:
| Q |
20 |
tacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaactc |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35678017 |
tacacagtcctagaatggacaatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacataactc |
35678116 |
T |
|
| Q |
120 |
atgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgccttcacctcccggttcccttattagtccctcggaa |
219 |
Q |
| |
|
|||||||||| || |||||||||| |||||||||||||| |||||||||||||||| ||||||||| || || ||||| |||||||||||||| || |
|
|
| T |
35678117 |
atgtaactgatgatgatttggttattatgaactacttgaaagctgtgatcaaagaaactcttcgcctccatgcaccagttccgttattagtccctcgaaa |
35678216 |
T |
|
| Q |
220 |
atctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttgggaa |
319 |
Q |
| |
|
||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678217 |
atcaatggaagatatcaaactaaatggctatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttgggaa |
35678316 |
T |
|
| Q |
320 |
caacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagaggtt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678317 |
gaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagaggtt |
35678416 |
T |
|
| Q |
420 |
gtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatggagtagaagggaagga |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
35678417 |
gtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgttcatcaatttgattggaaattgcctgatggtgtagaagggaagga |
35678516 |
T |
|
| Q |
520 |
tctggacatgtctgaaactaatggccttacttgccgtagaaaataccctctacttgcagttgctaccaaatac |
592 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35678517 |
tctggacatgtctgaaactaatggccttacttgccgtagaaaataccctctacttgcagttgctaccagatac |
35678589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 20 - 591
Target Start/End: Original strand, 35649937 - 35650508
Alignment:
| Q |
20 |
tacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaactc |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35649937 |
tacacagtcctagaatggacaatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaactc |
35650036 |
T |
|
| Q |
120 |
atgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgccttcacctcccggttcccttattagtccctcggaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || || ||||| |||||||||||||| || |
|
|
| T |
35650037 |
atgtaactgaggaggatttggttagcatgaactacttgaaagctgtgatcaaagaaactcttcgcctccatgcaccagttccgttattagtccctcgaaa |
35650136 |
T |
|
| Q |
220 |
atctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttgggaa |
319 |
Q |
| |
|
||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
35650137 |
atcaatggaagatatcaaactaaatggctatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagatccttcaagttgggat |
35650236 |
T |
|
| Q |
320 |
caacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagaggtt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35650237 |
caacctctagagtttaaaccagaaaggtttatgaacagttcaatagattataaaggattggattttgaacttattccatttggagcaggaaggagaggtt |
35650336 |
T |
|
| Q |
420 |
gtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatggagtagaagggaagga |
519 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||| | || ||| || |
|
|
| T |
35650337 |
gtcctggagtgttgtttgctattgctgtcaatgaattggtgctagcaaaccttgttcaccattttgattggaaattgcctgatggagttgcagtgaaaga |
35650436 |
T |
|
| Q |
520 |
tctggacatgtctgaaactaatggccttacttgccgtagaaaataccctctacttgcagttgctaccaaata |
591 |
Q |
| |
|
| ||||||||||||||||| ||| |||| || | ||||||||| || || |||||||| ||||||||||| |
|
|
| T |
35650437 |
tttggacatgtctgaaactgtcggcattacatgtcatagaaaatatcccctccttgcagtagctaccaaata |
35650508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 17 - 591
Target Start/End: Original strand, 35656614 - 35657188
Alignment:
| Q |
17 |
acctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaa |
116 |
Q |
| |
|
||||||||||| ||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | |||||||||||||| || |
|
|
| T |
35656614 |
acctacacagttctagaatgggcgatgacagaactattaagacaccaaactgtgatgcataaattgcaagatgagttgaggaatgtggttggtaacaaaa |
35656713 |
T |
|
| Q |
117 |
ctcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgccttcacctcccggttcccttattagtccctcg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||| || || ||||| || ||||||||||| |
|
|
| T |
35656714 |
ctcatgtaactgaggaggatttggttaacatgaactacttgaaagctgtgatcaaagaaactcttcgcctccatgcaccagttccgttgttagtccctcg |
35656813 |
T |
|
| Q |
217 |
gaaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttgg |
316 |
Q |
| |
|
||||| |||||| |||||||| || | || ||||||||||||||||||||||| |||||||||||||||||||| ||| | |||||| |||||| |||| |
|
|
| T |
35656814 |
aaaatcaatggaagatatcaaaataaatggctatgacattgcagctggtacacaagtaatagtcaatgcttgggctatttctagagacccttcaagttgg |
35656913 |
T |
|
| Q |
317 |
gaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagag |
416 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
35656914 |
gaagaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggaggg |
35657013 |
T |
|
| Q |
417 |
gttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatggagtagaagggaa |
516 |
Q |
| |
|
|||||||||| |||||||||| ||| | | ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35657014 |
gttgtcctggtgtgttgtttggaattgcagtgaatgaattggtgctagcaaaccttgtttaccaatttgattggaaattgcctgatggagtagaagggaa |
35657113 |
T |
|
| Q |
517 |
ggatctggacatgtctgaaactaatggccttacttgccgtagaaaataccctctacttgcagttgctaccaaata |
591 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
35657114 |
ggatttggacatgtctgaaactaatggccttacttgccatagaaaataccctctccttgcggtagctaccaaata |
35657188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 17 - 591
Target Start/End: Original strand, 35642357 - 35642931
Alignment:
| Q |
17 |
acctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaa |
116 |
Q |
| |
|
|||||||||||| |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
35642357 |
acctacacagtcttagaatgggcaatgacagaactgttaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggtaggtaatagaa |
35642456 |
T |
|
| Q |
117 |
ctcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgccttcacctcccggttcccttattagtccctcg |
216 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||| | || |||| |||||||||||||| |
|
|
| T |
35642457 |
ctcatgtaactgaaaaggatttggttaacatgaactacttgaaggctgtgattaaagaaactcttcgccttcatgttccttttcctttattagtccctcg |
35642556 |
T |
|
| Q |
217 |
gaaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttgg |
316 |
Q |
| |
|
||||| |||||| ||||||||||| | || |||||||||| |||||| ||| |||| ||| ||||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
35642557 |
aaaatcaatggaagatatcaaactaaacggctatgacattgaagctggaacagaggttataatcaatgcttgggctattgcaagagacccttcaagttgg |
35642656 |
T |
|
| Q |
317 |
gaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagag |
416 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||| |||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35642657 |
gaacatcctttagagtttaaaccagaaaggtttctgaacagttcaatagatttcaaaggatttgattttgaacttatcccatttggagcaggaaggagag |
35642756 |
T |
|
| Q |
417 |
gttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatggagtagaagggaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| | | || ||| |
|
|
| T |
35642757 |
gttgtcctggagtgttgtttgctattgctgtcaatgaattggtgctagcaaaccttgttcaccattttgattggaaattgcctgatggaattgcagagaa |
35642856 |
T |
|
| Q |
517 |
ggatctggacatgtctgaaactaatggccttacttgccgtagaaaataccctctacttgcagttgctaccaaata |
591 |
Q |
| |
|
||| |||||||||||||| | | || ||||||| | ||||||| ||||||| ||||| | ||||||||||| |
|
|
| T |
35642857 |
agatttggacatgtctgaagttgttagctttacttgtcatagaaaaaaccctctcattgcaatagctaccaaata |
35642931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 662 - 778
Target Start/End: Original strand, 35678657 - 35678773
Alignment:
| Q |
662 |
tttgaaagtgtggtttaatacttatatgttattgaataatgtagattgatgtttgaactttgagcaaatttagttcaagtaaagcatcaatttagttttt |
761 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35678657 |
tttgaaagtgtggtttaatacttatatgttattgaatgatgtatattgatgtttgaactttgaacaaatttagttcaagtaaagcatcaatttagttttt |
35678756 |
T |
|
| Q |
762 |
gaaattgttaggggatg |
778 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35678757 |
gaaattgttaggggatg |
35678773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1750 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: scaffold1750
Description:
Target: scaffold1750; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 920 - 1408
Alignment:
| Q |
17 |
acctacacagtcctagaatggactatgacagaactattaagacaccaaacagtgatgcataaattgcaagatgaggtgagaactgtggttggtaacagaa |
116 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
920 |
acctacacagttctagaatgggcaatgacagaattattaagacaccaaactgtgatgcataaattgcaagatgaggtgagaactgtggttggcaacaaaa |
1019 |
T |
|
| Q |
117 |
ctcatgtaactgaggaggatttggttagcatgaactacttgaaggctgtgatcaaagaaattcttcgccttcacctcccggttcccttattagtccctcg |
216 |
Q |
| |
|
||||||||||||| || |||||||||| |||||||||||||| |||||||||||||||| ||||||||| || || ||||| |||||||||||||| |
|
|
| T |
1020 |
ctcatgtaactgaagatgatttggttaatatgaactacttgaaagctgtgatcaaagaaactcttcgcctccatgcaccagttccgttattagtccctcg |
1119 |
T |
|
| Q |
217 |
gaaatctatggaaaatatcaaactagagggatatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagactcttcaatttgg |
316 |
Q |
| |
|
||||| |||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
1120 |
aaaatcaatggaagatatcaaactaaatggctatgacattgcagctggtacacaggtaatagtcaatgcttgggcaattgcaagagatccttcaagttgg |
1219 |
T |
|
| Q |
317 |
gaacaacctctagagtttaaaccagaaaggtttatgaatagttcaatagattataaaggattggattttgaacttatcccatttggagcaggaaggagag |
416 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1220 |
gatcaacctctagagtttaaaccagaaaggtttatgaacagttcaatagattataaaggattggattttgaacttattccatttggagcaggaaggagag |
1319 |
T |
|
| Q |
417 |
gttgtcctggagtgttgtttgctatttctatcaatgaattggttttagcgaaccttgtttaccaatttgattggaaattgcctgatgga |
505 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
1320 |
gttgtcctggagtgttgtttgctattgctgtcaatgaattggtgctagcaaaccttgttcaccattttgattggaaattgcctgatgga |
1408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 23024413 - 23024380
Alignment:
| Q |
270 |
aggtaatagtcaatgcttgggcaattgcaagaga |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
23024413 |
aggtgatagtcaatgcttgggcaattgcaagaga |
23024380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 23032840 - 23032807
Alignment:
| Q |
270 |
aggtaatagtcaatgcttgggcaattgcaagaga |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
23032840 |
aggtgatagtcaatgcttgggcaattgcaagaga |
23032807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 23039182 - 23039149
Alignment:
| Q |
270 |
aggtaatagtcaatgcttgggcaattgcaagaga |
303 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
23039182 |
aggtgatagtcaatgcttgggcaattgcaagaga |
23039149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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