View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_21 (Length: 421)
Name: NF7311_high_21
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_21 |
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Alignment Details
Target: chr1 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 375
Target Start/End: Original strand, 48888749 - 48889115
Alignment:
| Q |
9 |
gaagaatatcactgttttgaatctgctcaacaaaagtgaaaagatgcttttgtctagcagctatgatggagtgatcattagatggattccaggcattggc |
108 |
Q |
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| T |
48888749 |
gaagaatatcactgttttgaatctgctcaacaaaagtgaaaagatgcttttgtctagcagctatgatggagtgatcattagatggattccaggcattggc |
48888848 |
T |
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| Q |
109 |
tatagtggtaagtttgacagtaaacaatttggattaatcaaattgttagcagctgctgaagaagaagttgttacttctggatttgacaacaaggtaactg |
208 |
Q |
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| T |
48888849 |
tatagtggtaagtttgacagtaaacaatttggattaatcaaattgttagcagctgctgaagaagaagttgttacttctggatttgacaacaaggtaactg |
48888948 |
T |
|
| Q |
209 |
atatatatgtgtcataactaatcattatcatcatatgggctcttcaattgtcaagcttaaaaaataaccaatagatacattttatgttcagctgttctgt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
48888949 |
atatatatgtgtcataactaatcattatcatcatatgggctcttcaattgtcaagcttaaaaaataaccaatagatacattttatattcagctgttctgt |
48889048 |
T |
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| Q |
309 |
catcaatgcccatatcaaacataaaagtgaaactacacctctaatgtcactctgattgctgaattat |
375 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48889049 |
catcgatgcccatatcaaacataaaagtgaaactacacctctaatgtcactctgattgctgaattat |
48889115 |
T |
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