View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_high_23 (Length: 375)
Name: NF7311_high_23
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 149; Significance: 1e-78; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 47198765 - 47198946
Alignment:
| Q |
10 |
aagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47198765 |
aagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagttacattgaaataagtg |
47198864 |
T |
|
| Q |
110 |
agtt---agaagtattactttgcaatc-tttaaattagaaaaggatctttagtggattataatagatccttgccatttagctt |
188 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47198865 |
agttagaagaagtattac-ttgcaatcttttaaattagaaaaggatctttagtagattataatagatccttgccatttagctt |
47198946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 216 - 358
Target Start/End: Original strand, 47198939 - 47199081
Alignment:
| Q |
216 |
tttagtttaagcatttatcttttacgctcataattattttcattacattcagtgattgtacttcttcaattattataaatgaaatatttcatttggaatt |
315 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47198939 |
tttagcttaaccatttatcttttacgctcataattattttcattacattcagttattgtacttcttccattattataaatgaaatatttcatttggaatt |
47199038 |
T |
|
| Q |
316 |
cttcatttgagatccacttttgtaacttttaggagaggtattt |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47199039 |
cttcatttgagatccacttttgtaacttttaggagaggtattt |
47199081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 47186226 - 47186309
Alignment:
| Q |
10 |
aagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatgcattgaatttaaagt |
93 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
47186226 |
aagaatatacccattgaagatatggctgagaaagtatggaaacaacattggttctggaagaggtttatgcattgaatttaaagt |
47186309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 748437 - 748369
Alignment:
| Q |
10 |
aagaatatacctattgaagatatggctgagacagtgtggaaacaacattggttctggaggaggtttatg |
78 |
Q |
| |
|
||||| ||||| |||||||| ||| | |||| ||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
748437 |
aagaacataccaattgaagaaatgaccgagagagtatggaaacaacattggttctggaagaggtttatg |
748369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University