View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_high_25 (Length: 356)

Name: NF7311_high_25
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_high_25
NF7311_high_25
[»] chr4 (19 HSPs)
chr4 (2-340)||(12124565-12124903)
chr4 (4-340)||(12126621-12126957)
chr4 (20-311)||(2373238-2373528)
chr4 (1-340)||(2367655-2367991)
chr4 (24-141)||(2472032-2472149)
chr4 (24-112)||(2486276-2486364)
chr4 (19-135)||(2621158-2621274)
chr4 (33-78)||(1547467-1547512)
chr4 (35-135)||(2491074-2491174)
chr4 (271-313)||(2391278-2391320)
chr4 (24-78)||(2460600-2460654)
chr4 (271-312)||(2381650-2381691)
chr4 (26-71)||(2547542-2547587)
chr4 (271-314)||(2361222-2361265)
chr4 (41-112)||(5035591-5035662)
chr4 (24-78)||(2376235-2376289)
chr4 (41-139)||(2519175-2519273)
chr4 (278-319)||(2482521-2482562)
chr4 (35-135)||(5106327-5106427)
[»] chr1 (1 HSPs)
chr1 (26-156)||(15837967-15838097)
[»] chr5 (2 HSPs)
chr5 (35-141)||(39252916-39253022)
chr5 (26-78)||(32268773-32268825)
[»] chr8 (3 HSPs)
chr8 (24-79)||(39516859-39516914)
chr8 (26-78)||(32152209-32152261)
chr8 (37-141)||(34935764-34935868)
[»] chr3 (1 HSPs)
chr3 (117-159)||(37579635-37579677)
[»] chr6 (1 HSPs)
chr6 (35-71)||(6437159-6437195)


Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 2 - 340
Target Start/End: Complemental strand, 12124903 - 12124565
Alignment:
Q  2 gacaccaactgctacatggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaa 101  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12124903 gacaccaactgctacttggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattttccatcgcaatctctgatgaaacaa 12124804  T
Q  102 tccctttccttgaccgcctcttccaaaggttccccaaccttagatccctcgacctctcgaaagctagtaacataaacttgcttcttggccacaatgaata 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  12124803 tccctttccttgaccgcctcttccaaaggttccccaaccttagatccctcgacctctcgaaagctagaaacgtaaacttgcttcttggccacaatgaata 12124704  T
Q  202 tttcccattaggcatcaaatcgctcaatatttccaacaaaggtgaccttgatgcagatgtgttggtagttttgtccaaaaagatgaaaaatttgaccttt 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  12124703 tttcccattaggcatcaaatcgctcaatatttccaacaaaggtgaccttgatgcagatgtgttggtagttttgtccaaaaagatgaaaaatttgacctct 12124604  T
Q  302 ctcacttgttccagaatgatttgtatgctaaagagtgat 340  Q
    |||||||||||||||||||||||||||||||||||||||    
T  12124603 ctcacttgttccagaatgatttgtatgctaaagagtgat 12124565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 4 - 340
Target Start/End: Complemental strand, 12126957 - 12126621
Alignment:
Q  4 caccaactgctacatggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatc 103  Q
    ||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| ||||    
T  12126957 caccaactgctatttaaaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctcctattctccatcgcagtctcagatgaaaaaatc 12126858  T
Q  104 cctttccttgaccgcctcttccaaaggttccccaaccttagatccctcgacctctcgaaagctagtaacataaacttgcttcttggccacaatgaatatt 203  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| || |||| |||    
T  12126857 cctttccttgaccgcctattcaaaaggttccccaaccttagatccctcgacctctcgaaagctagaaacctaaacttgcttctttgccgcactgaagatt 12126758  T
Q  204 tcccattaggcatcaaatcgctcaatatttccaacaaaggtgaccttgatgcagatgtgttggtagttttgtccaaaaagatgaaaaatttgacctttct 303  Q
    |||| |||||||||||||| |||||| ||||||||||||||| | || ||| ||||||| ||||| ||||||||||| |||||||||||||||||| |||    
T  12126757 tccctttaggcatcaaatctctcaatttttccaacaaaggtggcattcatggagatgtgatggtacttttgtccaaacagatgaaaaatttgacctctct 12126658  T
Q  304 cacttgttccagaatgatttgtatgctaaagagtgat 340  Q
    || ||||||| ||||| || |||| | ||||||||||    
T  12126657 catttgttccggaatgtttagtattcaaaagagtgat 12126621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 2373238 - 2373528
Alignment:
Q  20 gaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcc 119  Q
    |||||||||||| |||| |||||||||||||||||||||||||| | ||||| ||||||||| ||||| || ||| ||||||| ||||||||| | ||||    
T  2373238 gaacctctctccgttgtttccaaacaatttctctccatcaccaatcatctccgattctccatagcaatgtc-gataaaacaattcctttccttaatcgcc 2373336  T
Q  120 tcttccaaaggttccccaaccttagatccctcgacctctcgaaagctagtaacataaacttgcttcttggccacaatgaatatttcccattaggcatcaa 219  Q
    |||||||||||||||||||||| |  |||||||||||||| |||| ||| ||| | |||||||||||  ||||||  ||| ||||||| | |  | ||||    
T  2373337 tcttccaaaggttccccaacctcacctccctcgacctctcaaaaggtagaaacctcaacttgcttctctgccacaccgaagatttcccttcaaacttcaa 2373436  T
Q  220 atcgctcaatatttccaacaaaggtgaccttgatgcagatgtgttggtagttttgtccaaaaagatgaaaaatttgacctttctcacttgtt 311  Q
    ||| |||||| |||||||||| |||||| || ||  || |  ||||||| |||||||| ||||||||||| ||||||||| |||||||||||    
T  2373437 atcactcaatttttccaacaatggtgacattcatataggtacgttggtaattttgtccgaaaagatgaaatatttgacctctctcacttgtt 2373528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 2367655 - 2367991
Alignment:
Q  1 cgacaccaactgctacatggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaaca 100  Q
    ||||| |||| ||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||| || ||| |||||    
T  2367655 cgacaacaaccgctacttggaacctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccatagcaatgtccgataaaaca 2367754  T
Q  101 atccctttccttgaccgcctcttccaaaggttccccaaccttagatccctcgacctctcgaaagctagtaacataaacttgcttcttggccacaatgaat 200  Q
    |||||||||||| | ||||| |||||||||||||||||||| | |||||||||| |||| |||| ||| ||| | |||||| || |   ||||| |||      
T  2367755 atccctttcctttatcgccttttccaaaggttccccaacctcacatccctcgacttctcaaaaggtagaaaccttaacttgtttgtctaccacattgaca 2367854  T
Q  201 atttcccattaggcatcaaatcgctcaatatttccaacaaaggtgaccttgatgcagatgtgttggtagttttgtccaaaaagatgaaaaatttgacctt 300  Q
    ||||||| |||  |||||||||||||||| |||||||| | ||   | || || || ||  ||||  | | |||||||||| ||||||||| |||||||     
T  2367855 atttccctttaaacatcaaatcgctcaatgtttccaaccacgg---cattcatacacataagttgcaattgttgtccaaaaggatgaaaaacttgacctc 2367951  T
Q  301 tctcacttgttccagaatgatttgtatgctaaagagtgat 340  Q
    ||| ||||||||| |||||||| |||| |  |||||||||    
T  2367952 tcttacttgttccggaatgattagtattcacaagagtgat 2367991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 141
Target Start/End: Complemental strand, 2472149 - 2472032
Alignment:
Q  24 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatct-ctgatgaaacaatccctttccttgaccgcctct 122  Q
    |||| ||||| ||||||||||| ||| ||||||||||||| ||||||  ||||||| || |||||| ||| ||||||||||||||||||| | | |||||    
T  2472149 ctctttccatggtctccaaacagtttttctccatcaccaatcgtctctgattctccctcacaatctactg-tgaaacaatccctttccttcatcacctct 2472051  T
Q  123 tccaaaggttccccaacct 141  Q
    || |||||||||| |||||    
T  2472050 tcgaaaggttccctaacct 2472032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 112
Target Start/End: Complemental strand, 2486364 - 2486276
Alignment:
Q  24 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttcctt 112  Q
    |||||||| | ||||| ||||| ||||| ||||||||||||||||||| ||||||  || ||||||| ||  |||||||||||||||||    
T  2486364 ctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctccgattctcggtcacaatctccgagaaaacaatccctttcctt 2486276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 2621158 - 2621274
Alignment:
Q  19 ggaacctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgc 118  Q
    ||||||||||||| | || |||||||| ||| | ||||||||||||||||| |  ||||||||| ||||||| ||| |||| ||||||||| ||   |||    
T  2621158 ggaacctctctccctcgtatccaaacagtttttgtccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgc 2621257  T
Q  119 ctcttccaaaggttccc 135  Q
    |||||| | ||||||||    
T  2621258 ctcttcgacaggttccc 2621274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 1547467 - 1547512
Alignment:
Q  33 ttgtctccaaacaatttctctccatcaccaaccgtctccaattctc 78  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||    
T  1547467 ttgtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 135
Target Start/End: Complemental strand, 2491174 - 2491074
Alignment:
Q  35 gtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggttcc 134  Q
    ||||| ||||| ||||| |||||||| |||||||||| ||| ||  || ||||||| |||| |||||||||||||||| | || |||||  |||||||||    
T  2491174 gtctcaaaacagtttctgtccatcacaaaccgtctccgattttcggtcacaatctccgatgcaacaatccctttccttaatcgtctctttgaaaggttcc 2491075  T
Q  135 c 135  Q
    |    
T  2491074 c 2491074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 271 - 313
Target Start/End: Original strand, 2391278 - 2391320
Alignment:
Q  271 tttgtccaaaaagatgaaaaatttgacctttctcacttgttcc 313  Q
    ||||||||||||||||||||||||||||| ||| |||||||||    
T  2391278 tttgtccaaaaagatgaaaaatttgacctctcttacttgttcc 2391320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 78
Target Start/End: Complemental strand, 2460654 - 2460600
Alignment:
Q  24 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctc 78  Q
    |||||||||| ||||||||||| || |||||||||||||| ||||||| ||||||    
T  2460654 ctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctc 2460600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 312
Target Start/End: Original strand, 2381650 - 2381691
Alignment:
Q  271 tttgtccaaaaagatgaaaaatttgacctttctcacttgttc 312  Q
    ||||||||||||||||||||||||||||| ||| ||||||||    
T  2381650 tttgtccaaaaagatgaaaaatttgacctctcttacttgttc 2381691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 2547587 - 2547542
Alignment:
Q  26 ctctccattgtctccaaacaatttctctccatcaccaaccgtctcc 71  Q
    |||||||| ||||||||||| ||||| |||||||||||||||||||    
T  2547587 ctctccatcgtctccaaacagtttctgtccatcaccaaccgtctcc 2547542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 314
Target Start/End: Original strand, 2361222 - 2361265
Alignment:
Q  271 tttgtccaaaaagatgaaaaatttgacctttctcacttgttcca 314  Q
    |||||||||||| |||||||||||||| | ||||||||||||||    
T  2361222 tttgtccaaaaaaatgaaaaatttgacatctctcacttgttcca 2361265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 112
Target Start/End: Complemental strand, 5035662 - 5035591
Alignment:
Q  41 aaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttcctt 112  Q
    ||||| ||||||||||||||||||||||| | |||||   ||  ||||||||| | ||||||||||||||||    
T  5035662 aaacagtttctctccatcaccaaccgtcttcgattcttggtcaaaatctctgaggcaacaatccctttcctt 5035591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 2376235 - 2376289
Alignment:
Q  24 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctc 78  Q
    |||||||||| |||||||||   ||||||||||||||||||||| ||| ||||||    
T  2376235 ctctctccatcgtctccaaaacttttctctccatcaccaaccgtttccgattctc 2376289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 139
Target Start/End: Complemental strand, 2519273 - 2519175
Alignment:
Q  41 aaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggttccccaac 139  Q
    ||||| ||||| ||||||||||||||| | | || |||  || ||||||| ||| ||||||||||||||||| | || |||||  | ||||||||||||    
T  2519273 aaacagtttctgtccatcaccaaccgttttcgatcctcagtcacaatctcagatcaaacaatccctttccttcatcgtctctttgataggttccccaac 2519175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 319
Target Start/End: Complemental strand, 2482562 - 2482521
Alignment:
Q  278 aaaaagatgaaaaatttgacctttctcacttgttccagaatg 319  Q
    |||||||||||||||||||| | |||||||||||||| ||||    
T  2482562 aaaaagatgaaaaatttgacatctctcacttgttccacaatg 2482521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 135
Target Start/End: Original strand, 5106327 - 5106427
Alignment:
Q  35 gtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggttcc 134  Q
    ||||| ||||| ||| | ||||||||||||||||  | ||||||  || ||||| || || |||| ||||||||| || | ||||||||| |||||||||    
T  5106327 gtctcaaaacagtttttgtccatcaccaaccgtcctcgattctcggtcacaatcactaatcaaaccatccctttcattcatcgcctcttcaaaaggttcc 5106426  T
Q  135 c 135  Q
    |    
T  5106427 c 5106427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 26 - 156
Target Start/End: Original strand, 15837967 - 15838097
Alignment:
Q  26 ctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttcc 125  Q
    ||||| || ||||||||||| ||||||||||||||||||||||||| ||||||| ||  ||||   ||| |||||||||||||| ||     ||||||||    
T  15837967 ctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattcctaacctcttcc 15838066  T
Q  126 aaaggttccccaaccttagatccctcgacct 156  Q
    |||||||||| ||||| | ||| ||||||||    
T  15838067 aaaggttccctaacctaacatctctcgacct 15838097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 39252916 - 39253022
Alignment:
Q  35 gtctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggttcc 134  Q
    ||||||| ||| ||||||||||||| ||||||||||| || |||| |||||||| | ||| |||||||||||| ||||   |  |||||  |||||||||    
T  39252916 gtctccatacagtttctctccatcagcaaccgtctccgatcctccctcgcaatcaccgatcaaacaatcccttcccttcctcttctctttgaaaggttcc 39253015  T
Q  135 ccaacct 141  Q
    |||||||    
T  39253016 ccaacct 39253022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 32268825 - 32268773
Alignment:
Q  26 ctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctc 78  Q
    |||||||| ||||||||||| || |||||||||||||||||||| | ||||||    
T  32268825 ctctccatcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 39516914 - 39516859
Alignment:
Q  24 ctctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctcc 79  Q
    |||||||||| ||||||| |||||||||| |||||||||||||||||  |||||||    
T  39516914 ctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctcc 39516859  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 32152261 - 32152209
Alignment:
Q  26 ctctccattgtctccaaacaatttctctccatcaccaaccgtctccaattctc 78  Q
    |||||| | ||||||||||| || ||||||||||||||| |||||| ||||||    
T  32152261 ctctccctcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 34935764 - 34935868
Alignment:
Q  37 ctccaaacaatttctctccatcaccaaccgtctccaattctccatcgcaatctctgatgaaacaatccctttccttgaccgcctcttccaaaggttcccc 136  Q
    ||||||||| || |||||| |||||||||||| | |||||||  || | || |||||| ||||  |||||| ||||   |||||||||||||||||  ||    
T  34935764 ctccaaacacttcctctccgtcaccaaccgtcacaaattctctctcactatttctgatcaaaccctcccttcccttcctcgcctcttccaaaggtttacc 34935863  T
Q  137 aacct 141  Q
    |||||    
T  34935864 aacct 34935868  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 159
Target Start/End: Original strand, 37579635 - 37579677
Alignment:
Q  117 gcctcttccaaaggttccccaaccttagatccctcgacctctc 159  Q
    ||||||||||||||||||| ||||| | |||||||||||||||    
T  37579635 gcctcttccaaaggttcccaaacctcaaatccctcgacctctc 37579677  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 6437195 - 6437159
Alignment:
Q  35 gtctccaaacaatttctctccatcaccaaccgtctcc 71  Q
    ||||||||||| || ||||||||||||||||||||||    
T  6437195 gtctccaaacagttcctctccatcaccaaccgtctcc 6437159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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