View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_29 (Length: 337)
Name: NF7311_high_29
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 322
Target Start/End: Original strand, 8874288 - 8874593
Alignment:
| Q |
17 |
cattccgtatggtaatgatttatactaacaaaagaatggtaataaatgtaaaaccataagaagaagcagaataagaccccatatgagtaataccccnnnn |
116 |
Q |
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| T |
8874288 |
cattccgtatggtaatgatttatactaacaaaagaatggtaataaatgtaaaaccataagaagaagcagaataagaccccatatgagtaataccccaaaa |
8874387 |
T |
|
| Q |
117 |
nnntatactcttttgttttatgatattattgatatactctcttatatagaatataacaataaatgctttgttagtaaccaacaaacaactcttaagtctc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8874388 |
aaatatactcttttgttttatgatattattgatatactctcttatatagaatataacaataaatgctttgttagtaaccaacaaacaactcttaagtctc |
8874487 |
T |
|
| Q |
217 |
acaacaaaggaaagagaaattttnnnnnnnnnnnnnnaaaagagagagaatagggttgatctaaaatcagtagagggattgtggtaagaaatgaaaggtg |
316 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8874488 |
acaacaaaggaaagagaaatttttgtgtgtgtgtgtgaaaagagagagaataggattgatctaaaatcagtagagggattgtggtaagaaatgaaaggtg |
8874587 |
T |
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| Q |
317 |
gaaact |
322 |
Q |
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|||||| |
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| T |
8874588 |
gaaact |
8874593 |
T |
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