View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_high_33 (Length: 329)
Name: NF7311_high_33
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_33 |
 | |
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| [»] chr1 (13 HSPs) |
| |
|
| [»] scaffold0690 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 329
Target Start/End: Original strand, 9337121 - 9337408
Alignment:
| Q |
52 |
taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat |
151 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| |||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9337121 |
taaggatattgaatgtttaatttgtaggtgcaatgattggctcaactgtgcttgttcttgtatttggatttatttttcaaatatatcgctattttaagat |
9337220 |
T |
|
| Q |
152 |
gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
9337221 |
gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagtgctttaaagccaactaggttctcttatgcagacttaaagagaattacaaat |
9337320 |
T |
|
| Q |
242 |
aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc |
329 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
9337321 |
aaatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatcgaaccaaattctagtagccgtgaagattc |
9337408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 329
Target Start/End: Original strand, 9363980 - 9364267
Alignment:
| Q |
52 |
taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat |
151 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||| |||| |||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
9363980 |
taaggatattgaatgtttaatttgtaggtgcaatgattggctcaactgtgcttgttcttgtatttggatttatttttcaaatatatcgctattttaagat |
9364079 |
T |
|
| Q |
152 |
gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
9364080 |
gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttaaagagaattacaaat |
9364179 |
T |
|
| Q |
242 |
aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc |
329 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
9364180 |
aaatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatcgaaccaaattctagtagccgtgaagattc |
9364267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 52 - 329
Target Start/End: Complemental strand, 9243063 - 9242777
Alignment:
| Q |
52 |
taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat |
151 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||| || | |||||| ||||| ||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
9243063 |
taaggatgttgaatgtta-atttgtaggtgcaatcattggctctactgtgcttgttcttgtatttggttttatttttaaaatatatcactattttaagat |
9242965 |
T |
|
| Q |
152 |
gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat |
241 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||| |||||||||||| |
|
|
| T |
9242964 |
gaaaagtgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacataaagagaattacaaat |
9242865 |
T |
|
| Q |
242 |
aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc |
329 |
Q |
| |
|
|||||| ||||||| ||||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
9242864 |
aaatttgaagataagataggcgaagggactcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattc |
9242777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 327
Target Start/End: Complemental strand, 9467256 - 9466973
Alignment:
| Q |
54 |
aggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagatga |
153 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||| ||||||| | ||||| | ||| | | || ||| ||| ||| ||||||||||| ||||||| |
|
|
| T |
9467256 |
aggatattgaatgtttaatttgtaggtggaatcatcggttcaactttgctattacttgttctcggcaccattgttcgaatttatcgctatttcaagatga |
9467157 |
T |
|
| Q |
154 |
aaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaataa |
243 |
Q |
| |
|
|| ||||||||||| |||||| |||||||||||||||||||| | |||||||||||||| ||||| ||| |||| ||||||||||| || |
|
|
| T |
9467156 |
aaggcgaagatcatgtaagaatcgaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaa |
9467057 |
T |
|
| Q |
244 |
atttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat |
327 |
Q |
| |
|
|||||| ||||| || || ||||||||||||||| ||||||| |||||||||||||| | ||||||||| || ||||| ||||| |
|
|
| T |
9467056 |
atttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattgtcaagccaaattctcgttgccgttaagat |
9466973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 9299761 - 9299932
Alignment:
| Q |
136 |
atcgctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagactt |
225 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||| |||||| |||||||||||||||||||| | |||||||||||||| ||||| ||| | |
|
|
| T |
9299761 |
atcgccatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacat |
9299860 |
T |
|
| Q |
226 |
aaaaagaattacaaataaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaatt |
297 |
Q |
| |
|
||| ||||||||||| |||||||| ||||| || || ||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
9299861 |
aaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaatt |
9299932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 9257948 - 9257783
Alignment:
| Q |
136 |
atcgctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaa----------ctatgcagactt |
225 |
Q |
| |
|
||||| |||| ||||||||| ||||||||||| |||||| |||||||||||||||||||| | ||||||||||||| |||||| ||| | |
|
|
| T |
9257948 |
atcgccatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacat |
9257849 |
T |
|
| Q |
226 |
aaaaagaattacaaataaatttaaagataaaataggtgaaggagctcatggaactgtttataaagg |
291 |
Q |
| |
|
|| ||||||||||| |||||||| ||||| || || ||||||||||| ||| ||||||| ||||| |
|
|
| T |
9257848 |
caagagaattacaaacaaatttaaggataagatcggagaaggagctcaaggagctgtttacaaagg |
9257783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9336557 - 9336601
Alignment:
| Q |
1 |
attaactacacatcgcaagtattagaagcaagtgatcctgaaaat |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9336557 |
attaactacacatcgcaagtattagaagcaagtgatcctgaaaat |
9336601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9363464 - 9363508
Alignment:
| Q |
1 |
attaactacacatcgcaagtattagaagcaagtgatcctgaaaat |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363464 |
attaactacacatcgcaagtattagaagcaagtgatcctgaaaat |
9363508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 8939148 - 8939245
Alignment:
| Q |
230 |
agaattacaaataaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat |
327 |
Q |
| |
|
||||||||| || |||| ||||| || |||| ||||||||||||||| |||| |||||||||||||| |||| |||||||| || ||||||||||| |
|
|
| T |
8939148 |
agaattacagatcaattcaaagaaaagctaggggaaggagctcatggagctgtctataaaggtaaattatcgagtcaaattcttgttgccgtgaagat |
8939245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9243594 - 9243550
Alignment:
| Q |
1 |
attaactacacatcgcaagtattagaagcaagtgatcctgaaaat |
45 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9243594 |
attaactacacatcgcaagtattagaagcacgtgatcctgaaaat |
9243550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 8926750 - 8926819
Alignment:
| Q |
258 |
taggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat |
327 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||| ||||| |||||| | || || |||||||| |
|
|
| T |
8926750 |
taggcgaaggagctcatggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagat |
8926819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 8961975 - 8962051
Alignment:
| Q |
140 |
ctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaacta |
216 |
Q |
| |
|
||||| || ||||||| | |||||||| || ||| |||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
8961975 |
ctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaacta |
8962051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 8962108 - 8962172
Alignment:
| Q |
263 |
gaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat |
327 |
Q |
| |
|
||||||||||||||| |||| || ||||||||||| |||| |||||||| || || |||||||| |
|
|
| T |
8962108 |
gaaggagctcatggagctgtctacaaaggtaaattatcgagtcaaattcttgttgctgtgaagat |
8962172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 56 - 329
Target Start/End: Original strand, 1192 - 1476
Alignment:
| Q |
56 |
gatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgc-tacttcttctatttggttttatttttcaaatatatcgctattttaagatgaa |
154 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||| | ||| | ||||||||||||||| ||||||||||||||| | ||| |||| ||||| |
|
|
| T |
1192 |
gatattgaatgtttaatttgtaggtgtaatcattggctcaactctgccttgttcttctatttggttccatttttcaaatatatagatatgttaaaatgaa |
1291 |
T |
|
| Q |
155 |
aagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaataaa |
244 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
1292 |
aggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagaattacaaataaa |
1391 |
T |
|
| Q |
245 |
tttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc |
329 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
1392 |
tttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattc |
1476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 56 - 329
Target Start/End: Complemental strand, 15910913 - 15910630
Alignment:
| Q |
56 |
gatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagatgaaa |
155 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||||||| |||| | | || ||||||||||||||| ||||||||||||||| | ||| |||| |||||| |
|
|
| T |
15910913 |
gatattgaatgtttaatttgtaggtgtaatcattggctcaacttttcttgttcttctatttggttccatttttcaaatatatagatatgttaaaatgaaa |
15910814 |
T |
|
| Q |
156 |
agcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaataaat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |
|
|
| T |
15910813 |
ggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagatttacaaataaat |
15910714 |
T |
|
| Q |
246 |
ttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc |
329 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
15910713 |
ttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattc |
15910630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 9171080 - 9171353
Alignment:
| Q |
52 |
taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat |
151 |
Q |
| |
|
||||||||||||||||| ||||| ||||| ||| |||||||||| | ||||| | ||| | | ||| |||| ||||| | ||| |||| ||||| |
|
|
| T |
9171080 |
taaggatattgaatgttaaatttgcaggtgtaataattggttcaactttgctagtgcttgtgctcggtgctattgttcaagtccatcatcatttcaagat |
9171179 |
T |
|
| Q |
152 |
gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat |
241 |
Q |
| |
|
|||| |||||||||||| |||||| |||||||||||||||||||||| |||||||||||||| ||||| ||| |||| ||||| |||||| |
|
|
| T |
9171180 |
gaaaggcgaagatcataaaagaatcgaaaactttttgaaggattacaaggctttaaagccaaccagattctcctatgctgacataaagagaatcacaaat |
9171279 |
T |
|
| Q |
242 |
aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagt |
315 |
Q |
| |
|
|||||||| ||||| |||| ||||||||||||||| ||||||| ||||||||||| || | |||||||||||| |
|
|
| T |
9171280 |
aaatttaaggataagttaggcgaaggagctcatggagctgtttacaaaggtaaattatcaagccaaattctagt |
9171353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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