View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_38 (Length: 295)
Name: NF7311_high_38
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 110
Target Start/End: Complemental strand, 30504967 - 30504864
Alignment:
| Q |
7 |
caaacttcactccagctggcaatccaggcaagtcattaattccaccaccctaattgtttttcattgatatcacattagtgtttatatttcacaaataata |
106 |
Q |
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| T |
30504967 |
caaacttcactccagctggcaatccaggtaagtcattaattccaccaccctaattattattcattgatatcacattagcatttatatttcacaaataatt |
30504868 |
T |
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| Q |
107 |
aata |
110 |
Q |
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|||| |
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| T |
30504867 |
aata |
30504864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 238 - 293
Target Start/End: Complemental strand, 30504788 - 30504733
Alignment:
| Q |
238 |
aattttatataattttagcatctactgttattatttttacaaaagattaatgtttt |
293 |
Q |
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|||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |
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| T |
30504788 |
aattttatataattttagtatccactgttattatttttacaaaaaattaatgtttt |
30504733 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 30512598 - 30512545
Alignment:
| Q |
7 |
caaacttcactccagctggcaatccaggcaagtcattaattccaccaccctaat |
60 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |
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| T |
30512598 |
caaacttcactccagaaggcaatccaggcaagtaattaattccactcccctaat |
30512545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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