View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_high_44 (Length: 272)
Name: NF7311_high_44
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 267
Target Start/End: Complemental strand, 24621596 - 24621348
Alignment:
| Q |
19 |
aaacctaacgttgcttgttatcaatctgttatgtgtcaactatacaaacggagatcaagacggtttgttatgaataagattgcagaacaggtgaaaatgt |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
24621596 |
aaacctaatgttgcttgttatcaatctgttatgtgtcaactatacaaacggagatcaaaacggtttgttatgaataagattgcagaacaggtgaaaattt |
24621497 |
T |
|
| Q |
119 |
tcgagagtgcaaaacattatcccgatccttactatacataaatatgattgaacaacaacaaactatttaaagtggacagtctttgtttggtgaagcattg |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24621496 |
tcgaggatgcaaaacattatcccgatccttactatacataaatatgattgaacaacaacaaactatttaaagtggacagtctttgtttggtgaagcattg |
24621397 |
T |
|
| Q |
219 |
atgttatcctaagacaatggttggtttggtttggtctggtttcgttgca |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24621396 |
atgttatcctaagacaatggttggtttggtttggtctggtttcgttgca |
24621348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 172
Target Start/End: Original strand, 23787279 - 23787432
Alignment:
| Q |
19 |
aaacctaacgttgcttgttatcaatctgttatgtgtcaactatacaaacggagatcaagacggtttgttatgaataagattgcagaacaggtgaaaatgt |
118 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
23787279 |
aaacctaatgttgcttgttatcaacctgttatgtgtcaactatacaaacggagatcaagacggtttgttatgaataagattgcagaacaagtgaaaattt |
23787378 |
T |
|
| Q |
119 |
tcgagagtgcaaaacattatcccgatccttactatacataaatatgattgaaca |
172 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
23787379 |
tcgagaatgcaaaacattatctcgatccttactatacataaatatgattgaaca |
23787432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 47569519 - 47569609
Alignment:
| Q |
156 |
ataaatatgattgaacaacaacaaactatttaaagtggacagtctttgtttggtgaagcattgatgttatcctaagacaatggttggtttggtttg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
47569519 |
ataaatatgattgaacaacaacaaactatttaaagtgggc-----ttgtttggtgaagcattgacgttatccaaagacaatggttggtttggtttg |
47569609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 253
Target Start/End: Original strand, 16375577 - 16375669
Alignment:
| Q |
156 |
ataaatatgattgaacaacaacaaactatttaaagtggacagtctttgtttggtgaagcattgatgttatcctaagacaa-tggttggtttggtttggt |
253 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| | |||||||||||||||||| ||||| | ||||||| | |||||||||||||||| |
|
|
| T |
16375577 |
ataaatatgattgaacaataaaaaactatttaaagtgagc-----ttgtttggtgaagcattggtgtta-gcaaagacaatttgttggtttggtttggt |
16375669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University