View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_47 (Length: 251)
Name: NF7311_high_47
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_47 |
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| [»] scaffold0690 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 27 - 241
Target Start/End: Original strand, 9243487 - 9243701
Alignment:
| Q |
27 |
aatccgaaatggatatattgatgaagtgaaattggaattaagtaataagagtcgtggaagacaattttcaggatcacgtgctcttaatacttgcgatgtg |
126 |
Q |
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||||||||| ||| |||||||||||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
9243487 |
aatccgaaaaggaaatattgatgaagtgaaattggagtgaagaagtaagagtcgtggaagacaattttcaggatcacgtgcttctaatacttgcgatgtg |
9243586 |
T |
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| Q |
127 |
tagttaatttcacttatgaggagttttatagggactggataagcaggtatttcaagaatcttcttgttatggttacaagatagtttgaagggacatccaa |
226 |
Q |
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| T |
9243587 |
tagttaatgtgacttatgaggagttttatagggactggataagcaggtagttcaagaatcttgttgttatggttacaagatagtttgaagggacatccaa |
9243686 |
T |
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| Q |
227 |
tggtagggatattct |
241 |
Q |
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|||||||||| |||| |
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| T |
9243687 |
tggtagggattttct |
9243701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 9336671 - 9336447
Alignment:
| Q |
20 |
catcaaaaatccgaaatggatatattgatgaagtgaaattggaattaagtaataagagtcgtggaagacaattttcaggatcacgtgctcttaatacttg |
119 |
Q |
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|||||| ||||||||| ||| |||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
9336671 |
catcaataatccgaaaaggaaatattgatgaagtgaaattggactgaagtaacaagagtcgtggaagacaattttcaggatcacttgcttctaatacttg |
9336572 |
T |
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| Q |
120 |
cgatgtgtagttaatttcacttatgaggagttttatagggactggataagcaggtatttcaagaatcttcttgtt---atggttacaagatagtttgaag |
216 |
Q |
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| T |
9336571 |
cgatgtgtagttaatgtaatttatgaggagttttataggtactggataagaaggtatttcaagaatcttcttgttatgatggttacatgataaattaaag |
9336472 |
T |
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| Q |
217 |
ggacatccaatggtagggatattct |
241 |
Q |
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| T |
9336471 |
ggacatctaatagtagggattttct |
9336447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 9363578 - 9363354
Alignment:
| Q |
20 |
catcaaaaatccgaaatggatatattgatgaagtgaaattggaattaagtaataagagtcgtggaagacaattttcaggatcacgtgctcttaatacttg |
119 |
Q |
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|||||| ||||||||| ||| |||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
9363578 |
catcaataatccgaaaaggaaatattgatgaagtgaaatctgactgaagtaacaagagtcgtggaagacaattttcaggatcacttgcttctaatacttg |
9363479 |
T |
|
| Q |
120 |
cgatgtgtagttaatttcacttatgaggagttttatagggactggataagcaggtatttcaagaatcttcttgtt---atggttacaagatagtttgaag |
216 |
Q |
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| T |
9363478 |
cgatgtgtagttaatgtgatttatgaggagttttataggaattggataagaaggtatttcaagaatcttcttgttatgatggttacatgataaattgaag |
9363379 |
T |
|
| Q |
217 |
ggacatccaatggtagggatattct |
241 |
Q |
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| T |
9363378 |
ggacatccaatagtagggattttct |
9363354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 9467779 - 9467825
Alignment:
| Q |
150 |
ttttatagggactggataagcaggtatttcaagaatcttcttgttat |
196 |
Q |
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| T |
9467779 |
ttttatagggactggataagtaggaatttcaataatcttcatgttat |
9467825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 756 - 550
Alignment:
| Q |
20 |
catcaaaaatccgaaatggatatattgatgaagtgaaattggaattaagtaataagagtcgtggaagacaattttcaggatcacgtgctcttaatacttg |
119 |
Q |
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|||||| ||||||||| ||| | |||||||||| |||||||| | |||||| ||||||||||| ||| | ||| ||||| |||||| |||||||| |
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| T |
756 |
catcaataatccgaaaaggaaaaattgatgaagagaaattgggctgaagtaa---gagtcgtggaaaacagtgttcgggatcgcgtgcttccaatacttg |
660 |
T |
|
| Q |
120 |
cgatgtgtagttaatttcacttatgaggagttttatagggactggataagcaggtatttcaagaatcttcttgttatggttacaagatagtttgaaggga |
219 |
Q |
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||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||| || | ||| |||||||||| ||||| ||| |
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| T |
659 |
cgatgtgtagttaatgacccttatgaggagttttattgggactggataagcaggtagttcaagaatcttgttatcatgtgtacaagatagattgaaagga |
560 |
T |
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| Q |
220 |
catccaatgg |
229 |
Q |
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| T |
559 |
catccaatgg |
550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 15911349 - 15911555
Alignment:
| Q |
20 |
catcaaaaatccgaaatggatatattgatgaagtgaaattggaattaagtaataagagtcgtggaagacaattttcaggatcacgtgctcttaatacttg |
119 |
Q |
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|||||| ||||||||| ||| | |||||||||| |||||||| | |||||| ||||||||||| ||| | ||| |||||||||||| ||||| || |
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| T |
15911349 |
catcaataatccgaaaaggaaaaattgatgaagagaaattgggctgaagtaa---gagtcgtggaaaacagtgttcgggatcacgtgcttccaatacatg |
15911445 |
T |
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| Q |
120 |
cgatgtgtagttaatttcacttatgaggagttttatagggactggataagcaggtatttcaagaatcttcttgttatggttacaagatagtttgaaggga |
219 |
Q |
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||||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||||||| || | ||| |||||||||| ||||| ||| |
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| T |
15911446 |
cgatgtgtagttaatgacccttatgaggagttttattgggactggataagcaggtagttcaagaatcttgttatcatgtgtacaagatagattgaaagga |
15911545 |
T |
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| Q |
220 |
catccaatgg |
229 |
Q |
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|||||||||| |
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| T |
15911546 |
catccaatgg |
15911555 |
T |
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