View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_high_60 (Length: 239)

Name: NF7311_high_60
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_high_60
NF7311_high_60
[»] chr8 (8 HSPs)
chr8 (1-223)||(36210309-36210531)
chr8 (1-148)||(36197191-36197338)
chr8 (1-159)||(36188828-36188986)
chr8 (1-148)||(36214895-36215042)
chr8 (1-143)||(36213657-36213799)
chr8 (73-144)||(36202822-36202893)
chr8 (73-108)||(36208294-36208329)
chr8 (75-108)||(36185113-36185146)


Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36210309 - 36210531
Alignment:
Q  1 atcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  36210309 atcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcttttttttggcccgcataatccgattatattttctc 36210408  T
Q  101 cttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataaatgtccaccccactactcccacatatcaaatcccatccccg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36210409 cttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataaatgtccaccccactactcccacatatcaaatcccatccccg 36210508  T
Q  201 ctgaaacgacataatggcacaag 223  Q
    |||||||||||||||||||||||    
T  36210509 ctgaaacgacataatggcacaag 36210531  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 36197191 - 36197338
Alignment:
Q  1 atcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctc 100  Q
    |||||||||||  | |||||| |||| ||||||||||||||||||| ||||||||||| |||||        ||||| |||||||| || ||||||||||    
T  36197191 atcttttggaataattgatctctctcagctcttcttatagctgtttttgcagaatgcttgactcttttttctggcccacataatccaatgatattttctc 36197290  T
Q  101 cttggtctctcacacttagtgcactcataatttgttctttaaccttat 148  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36197291 cttggtctctcactcttagtgcactcataatttgttctttaaccttat 36197338  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 36188828 - 36188986
Alignment:
Q  1 atcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctc 100  Q
    |||||||||||| | ||||||||||| ||| ||||||||||||||  ||||||| |||||||||        ||||||||||||||||||||||||||||    
T  36188828 atcttttggaacaattgatctttctcagctgttcttatagctgttaatgcagaacgctcgactcttttttttggcccgcataatccgattatattttctc 36188927  T
Q  101 cttggtctctcacacttagtgcactcataatttgttctttaaccttattatcaatataa 159  Q
    | | ||||||||| | || ||||||| |||||||   ||||||||||  ||||||||||    
T  36188928 cattgtctctcactcctaatgcactcgtaatttgaattttaaccttacgatcaatataa 36188986  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 36214895 - 36215042
Alignment:
Q  1 atcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctc 100  Q
    |||||||||||| | |||||| |||| ||||||||||||||||||| | ||||||||| ||||         ||||||||||||||||||||| ||| ||    
T  36214895 atcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaatgcttgactttttcatctggcccgcataatccgattatactttatc 36214994  T
Q  101 cttggtctctcacacttagtgcactcataatttgttctttaaccttat 148  Q
      ||||||||||| |||| ||||||| |||| ||||||||||| ||||    
T  36214995 tctggtctctcactcttaatgcactcgtaatctgttctttaacattat 36215042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 36213657 - 36213799
Alignment:
Q  1 atcttttggaacgaatgatctttctctgctcttcttatagctgtttgtgcagaatgctcgactcnnnnnnnnggcccgcataatccgattatattttctc 100  Q
    |||||||||||| | |||||| |||| ||||||||||||||||||| | ||||| ||   ||||        || |||||||||||||||||||||||||    
T  36213657 atcttttggaacaattgatctctctcagctcttcttatagctgtttttacagaaagccttactctttcatccgggccgcataatccgattatattttctc 36213756  T
Q  101 cttggtctctcacacttagtgcactcataatttgttctttaac 143  Q
    |||||||||||||  ||| |||| || |||| || ||||||||    
T  36213757 cttggtctctcacttttaatgcattcgtaatctgatctttaac 36213799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 36202822 - 36202893
Alignment:
Q  73 ggcccgcataatccgattatattttctccttggtctctcacacttagtgcactcataatttgttctttaacc 144  Q
    |||||||||||||| ||||| |||||||||||||||||||| |||||||||  |||||| || || ||||||    
T  36202822 ggcccgcataatccaattatgttttctccttggtctctcactcttagtgcatccataatctggtccttaacc 36202893  T

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Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 108
Target Start/End: Original strand, 36208294 - 36208329
Alignment:
Q  73 ggcccgcataatccgattatattttctccttggtct 108  Q
    ||||||||||||||||||||||||||||||||||||    
T  36208294 ggcccgcataatccgattatattttctccttggtct 36208329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 75 - 108
Target Start/End: Original strand, 36185113 - 36185146
Alignment:
Q  75 cccgcataatccgattatattttctccttggtct 108  Q
    ||||||||||||||||||||||||||||||||||    
T  36185113 cccgcataatccgattatattttctccttggtct 36185146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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