View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_61 (Length: 239)
Name: NF7311_high_61
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_61 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 17753210 - 17753422
Alignment:
| Q |
18 |
ctctctgcttggtgtgtcctttgtcccgtagtccgatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaag |
117 |
Q |
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| T |
17753210 |
ctctctgcttggtgtgtcctctgtcccgtagtccgatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaag |
17753309 |
T |
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| Q |
118 |
tggaccaaaccctgtctcacgcaacaagggttccgatggaagtacctccttcacacctaatgctgcatgttttagtaagtatggaaaccttgtttatgtg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
17753310 |
tggaccaaaccctgcctcacgcaacaagggttccgatggaagtacctccttcacacctactgctgcatgttttagtaagtatggaaaccttgtttatatg |
17753409 |
T |
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| Q |
218 |
ggaaactcgaaag |
230 |
Q |
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||||||||||||| |
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| T |
17753410 |
ggaaactcgaaag |
17753422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 17762197 - 17762409
Alignment:
| Q |
18 |
ctctctgcttggtgtgtcctttgtcccgtagtccgatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaag |
117 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17762197 |
ctctctgcttggtgtgtcctctgtcccgtagtccgatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaag |
17762296 |
T |
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| Q |
118 |
tggaccaaaccctgtctcacgcaacaagggttccgatggaagtacctccttcacacctaatgctgcatgttttagtaagtatggaaaccttgtttatgtg |
217 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
17762297 |
tggaccaaaccctgcctcacgcaacaagggttccgatggaagtacctccttcacacctactgctgcatgttttagtaagtatggaaaccttgtttatatg |
17762396 |
T |
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| Q |
218 |
ggaaactcgaaag |
230 |
Q |
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||||||||||||| |
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| T |
17762397 |
ggaaactcgaaag |
17762409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 17739062 - 17739274
Alignment:
| Q |
18 |
ctctctgcttggtgtgtcctttgtcccgtagtccgatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaag |
117 |
Q |
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|||||||||||| ||||||| | || ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17739062 |
ctctctgcttggcgtgtcctctctcacgtgctccaatgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaag |
17739161 |
T |
|
| Q |
118 |
tggaccaaaccctgtctcacgcaacaagggttccgatggaagtacctccttcacacctaatgctgcatgttttagtaagtatggaaaccttgtttatgtg |
217 |
Q |
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|||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
17739162 |
tggaccaaaccctgcctcacgcaacaagggttctgatggaagtacctccttcacacctactgcagcatgttttagtaagtatggaaaccttgtttatgtg |
17739261 |
T |
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| Q |
218 |
ggaaactcgaaag |
230 |
Q |
| |
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||||||||||||| |
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| T |
17739262 |
ggaaactcgaaag |
17739274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 53 - 230
Target Start/End: Original strand, 15735202 - 15735379
Alignment:
| Q |
53 |
atgattgttgacttaaacactgaaaatacaacttatcttcaagtttctgtctctgacaaaccaagtggaccaaaccctgtctcacgcaacaagggttccg |
152 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||| | |
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| T |
15735202 |
atgattgttgacttaaacactgaaaatacaatttatcttcaagtttctgtctctgagaaaccaagtggaccaaaccctgcctcacgcaacaagtgttctg |
15735301 |
T |
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| Q |
153 |
atggaagtacctccttcacacctaatgctgcatgttttagtaagtatggaaaccttgtttatgtgggaaactcgaaag |
230 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
15735302 |
atggaagcacctccttcacacctactgctgcatgttttagtaagtatggaaacctggtttatgtaggaaactcgaaag |
15735379 |
T |
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