View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_high_65 (Length: 235)
Name: NF7311_high_65
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_65 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38625265 - 38625033
Alignment:
| Q |
1 |
taaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38625265 |
taaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag |
38625166 |
T |
|
| Q |
101 |
ataatcattgttgtgggaataataccttacatgacagacaaaaaaccaaaataagnnnnnnnnnnngtttcaggatcagccgtaagaaatatcatgaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
38625165 |
ataatcattgttgtgggaataataccttacatcacagacaaaaaaccaaaataag--aaaaaaaaagtttcaggatcagctgtaagaaatatcatgaacc |
38625068 |
T |
|
| Q |
201 |
ccgtacttgaaaaatatgcagcatgaagataaaat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38625067 |
ccgtacttgaaaaatatgcagcatgaagataaaat |
38625033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 38650314 - 38650085
Alignment:
| Q |
1 |
taaagaaagagaatagaaagcttacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38650314 |
taaagaaagagaatagaaagctgacaggaataaaatcagcagggttttctttgatggacggaatctcatatattgccttatagcagcggcaaatttcaag |
38650215 |
T |
|
| Q |
101 |
ataatcattgttgtgggaataataccttacatgacagacaaaaaaccaaaataagnnnnnnnnnnngtttcaggatcagccgtaagaaatatcatgaacc |
200 |
Q |
| |
|
||||||||||||||||||||||||||| | || |||||| |||| || ||||| | ||||||||||| ||||||||||||||||||| |
|
|
| T |
38650214 |
ataatcattgttgtgggaataatacctaaaat--cagacagaaaa-cagcataaggaaaaaaaaaag--tcaggatcagcagtaagaaatatcatgaacc |
38650120 |
T |
|
| Q |
201 |
ccgtacttgaaaaatatgcagcatgaagataaaat |
235 |
Q |
| |
|
| ||| |||||||||| |||||||||||||||| |
|
|
| T |
38650119 |
acaaactagaaaaatatgtagcatgaagataaaat |
38650085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University