View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_71 (Length: 216)
Name: NF7311_high_71
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_71 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 200
Target Start/End: Complemental strand, 2662365 - 2662181
Alignment:
| Q |
16 |
attattctatgttctgaaattgttgcagtggatacatgcctccagagtacacaatggatggacatttctctttcaaatctgatgtttatagctttggagt |
115 |
Q |
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| T |
2662365 |
attattctatgttctgaaattgttgcagtggatacatgcctccagagtacgcaatggatggacatttctctttcaaatctgatgtttatagctttggagt |
2662266 |
T |
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| Q |
116 |
tttacttttagagctattgagtggcaagaaaaacagaggattttttcaccctgatcacaagttgaatctcttaggccatgtgagt |
200 |
Q |
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| T |
2662265 |
tttacttttagagctgttgagtggcaagaaaaacagaggattttttcaccctgatcacaagttgaatctcttaggccatgtgagt |
2662181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Original strand, 5829871 - 5829949
Alignment:
| Q |
38 |
ttgcagtggatacatgcctccagagtacacaatggatggacatttctctttcaaatctgatgtttatagctttggagtt |
116 |
Q |
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| T |
5829871 |
ttgcagtggatatatgcctccagagtatgcagtgcatgggtttttctcaataaaatctgatgtttttagctttggagtt |
5829949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 115
Target Start/End: Original strand, 5804115 - 5804192
Alignment:
| Q |
38 |
ttgcagtggatacatgcctccagagtacacaatggatggacatttctctttcaaatctgatgtttatagctttggagt |
115 |
Q |
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|||||||||||| ||||||||||| || || || ||||| ||||||| | ||||||||||||| |||||| ||||| |
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| T |
5804115 |
ttgcagtggatatatgcctccagaatatgcagtgcatggatctttctctataaaatctgatgtttttagcttcggagt |
5804192 |
T |
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