View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_high_76 (Length: 207)
Name: NF7311_high_76
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_high_76 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 1459195 - 1459373
Alignment:
| Q |
14 |
agaagaaaccttgttgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcag |
113 |
Q |
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| T |
1459195 |
agaagaaaccttgttgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctaaaatgttcaagacaaggtctgacatcag |
1459294 |
T |
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| Q |
114 |
aggaaggagccagcaggctacaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagttttt |
192 |
Q |
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| T |
1459295 |
aggaaggagccagcaggcttcaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagttttt |
1459373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 1499515 - 1499369
Alignment:
| Q |
47 |
taggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagcaggctacaagtctttggac |
146 |
Q |
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| T |
1499515 |
taggaacggattccaatagacgaggtgtttgagcagctaaaatgttcaagacaaggtctgacatcagaagaaggagccaacaggcttcaagtctttggac |
1499416 |
T |
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| Q |
147 |
caaacaaactggaagagaaaagtgagaacaagtttttgaagtttttg |
193 |
Q |
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| T |
1499415 |
caaacaaattggaagagaaaaaagagagcaagtttttgaagtttttg |
1499369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 26787069 - 26787244
Alignment:
| Q |
18 |
gaaaccttgttgattttgttgtttgttattaggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagagga |
117 |
Q |
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| T |
26787069 |
gaaaccttgttgattttgttgtttgttattaggatcgggttccgttggaagaagtgttcgatcatctgaaatgttcgagacaaggtttgacatcggagga |
26787168 |
T |
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| Q |
118 |
aggagccagcaggctacaagtctttggaccaaacaaactggaagagaaaagtgagaacaagtttttgaagtttttg |
193 |
Q |
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| T |
26787169 |
aggagcgagtaggcttgaagtatttggacataacaaactcgaagagaaaactgagaacaagtttttgaaatttttg |
26787244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 48 - 189
Target Start/End: Original strand, 50273215 - 50273356
Alignment:
| Q |
48 |
aggaacgggttccaatagaagaagtgtttgatcatctgaaatgttcaagacaaggtctgacatcagaggaaggagccagcaggctacaagtctttggacc |
147 |
Q |
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||||||| ||||| |||| |||||||| || || ||||||||||||||| |||| | || ||||| |||||||||| |||||| ||||| ||||| || |
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| T |
50273215 |
aggaacgaattccagtagaggaagtgttcgagcaactgaaatgttcaagagcaggtttaacctcagacgaaggagccaacaggcttcaagtgtttggtcc |
50273314 |
T |
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| Q |
148 |
aaacaaactggaagagaaaagtgagaacaagtttttgaagtt |
189 |
Q |
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| T |
50273315 |
aaacaaattggaagagaaaagggaaagcaagtttttgaagtt |
50273356 |
T |
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