View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_1 (Length: 939)

Name: NF7311_low_1
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_1
NF7311_low_1
[»] chr6 (18 HSPs)
chr6 (429-934)||(26092990-26093494)
chr6 (234-428)||(26092741-26092935)
chr6 (234-416)||(25988029-25988211)
chr6 (18-168)||(26092521-26092675)
chr6 (73-168)||(97250-97348)
chr6 (241-323)||(14200612-14200693)
chr6 (21-72)||(14200759-14200810)
chr6 (73-143)||(10895087-10895160)
chr6 (256-312)||(14113877-14113933)
chr6 (236-312)||(97408-97484)
chr6 (234-295)||(27156386-27156446)
chr6 (73-167)||(27156513-27156610)
chr6 (234-283)||(31709567-31709615)
chr6 (26-69)||(7171555-7171598)
chr6 (357-432)||(25529127-25529202)
chr6 (254-328)||(32505071-32505146)
chr6 (235-288)||(6059751-6059803)
chr6 (256-289)||(32398497-32398530)
[»] chr1 (4 HSPs)
chr1 (74-167)||(51065059-51065155)
chr1 (256-312)||(48491583-48491639)
chr1 (256-312)||(51286662-51286718)
chr1 (236-289)||(27133187-27133239)
[»] chr4 (14 HSPs)
chr4 (73-168)||(55405022-55405120)
chr4 (236-289)||(44504912-44504964)
chr4 (256-323)||(9816430-9816497)
chr4 (26-69)||(37466391-37466434)
chr4 (238-280)||(53816126-53816167)
chr4 (21-69)||(14799512-14799560)
chr4 (79-168)||(16401058-16401150)
chr4 (234-286)||(24535093-24535144)
chr4 (234-289)||(16401216-16401270)
chr4 (234-289)||(27599689-27599743)
chr4 (121-167)||(24536016-24536062)
chr4 (73-123)||(27599233-27599282)
chr4 (77-123)||(43335455-43335500)
chr4 (234-287)||(43335298-43335350)
[»] chr3 (10 HSPs)
chr3 (73-168)||(8425317-8425415)
chr3 (73-168)||(19972022-19972120)
chr3 (235-289)||(21496851-21496904)
chr3 (236-312)||(19971881-19971957)
chr3 (236-284)||(8425210-8425257)
chr3 (256-312)||(43946417-43946473)
chr3 (234-289)||(14195197-14195251)
chr3 (73-167)||(54788856-54788953)
chr3 (234-286)||(54789028-54789079)
chr3 (26-69)||(2734301-2734344)
[»] chr5 (13 HSPs)
chr5 (75-167)||(19676946-19677041)
chr5 (26-73)||(3781426-3781473)
chr5 (234-286)||(37259315-37259366)
chr5 (261-312)||(3781291-3781342)
chr5 (234-295)||(34438395-34438455)
chr5 (256-323)||(7349599-7349666)
chr5 (234-289)||(19647159-19647213)
chr5 (234-297)||(38352142-38352204)
chr5 (256-323)||(13626769-13626836)
chr5 (26-69)||(22272692-22272735)
chr5 (256-323)||(38394984-38395051)
chr5 (263-297)||(11776133-11776167)
chr5 (234-284)||(35634958-35635007)
[»] chr7 (10 HSPs)
chr7 (76-168)||(37126627-37126722)
chr7 (236-323)||(37126787-37126874)
chr7 (234-288)||(380782-380835)
chr7 (256-289)||(8363914-8363947)
chr7 (256-288)||(21626436-21626468)
chr7 (26-69)||(8362573-8362616)
chr7 (26-69)||(18887121-18887164)
chr7 (256-289)||(12002185-12002218)
chr7 (256-289)||(21452035-21452068)
chr7 (123-168)||(25156541-25156586)
[»] chr2 (11 HSPs)
chr2 (21-72)||(5086396-5086447)
chr2 (21-72)||(43327679-43327730)
chr2 (73-168)||(41318109-41318207)
chr2 (73-168)||(5088674-5088772)
chr2 (256-313)||(9844717-9844774)
chr2 (236-284)||(5088837-5088884)
chr2 (256-312)||(41318293-41318349)
chr2 (236-284)||(43327773-43327820)
chr2 (256-289)||(19258383-19258416)
chr2 (73-168)||(9844821-9844919)
chr2 (234-287)||(5885317-5885369)
[»] chr8 (5 HSPs)
chr8 (234-284)||(32382351-32382401)
chr8 (234-284)||(32436306-32436356)
chr8 (73-164)||(18427635-18427729)
chr8 (77-168)||(20098965-20099059)
chr8 (234-288)||(20099124-20099177)
[»] scaffold0024 (1 HSPs)
scaffold0024 (234-323)||(11739-11827)
[»] scaffold0005 (1 HSPs)
scaffold0005 (21-69)||(40167-40215)


Alignment Details
Target: chr6 (Bit Score: 423; Significance: 0; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 429 - 934
Target Start/End: Original strand, 26092990 - 26093494
Alignment:
Q  429 atacacacagtatatttcaccacctatagtatatttcgacattaagcatagataaaatttaacnnnnnnnnnnn-cattaagcatagatacactatattc 527  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||||| |||||||||||||||||    
T  26092990 atacacacagtatatttcaccacctatagtatatttcgacattaagcatagataaaatttaacaaaaaaaaaaaacattaagtatagatacactatattc 26093089  T
Q  528 cagtaccaccccttcaatgttacactatcatagatcctctgttactcaattgtaactaatatacaattaagttcaattatacatttcttctgttacttag 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26093090 cagtaccaccccttcaatgttacactatcatagatcctctgttactcaattgtaactaatatacaattaagttcaattatacatttcttctgttacttag 26093189  T
Q  628 cagaaacccttgcctctccattcacccctttattgagttttaattcaagtgatagacttgggaatgattggttagttactaagtttaaacaaactcagga 727  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  26093190 cagaaacccttgcctctccattcacccctttattgagttttaattcaagtgatagacttaggaatgattggttagttactaagtttaaacaaactcagga 26093289  T
Q  728 agttccagtgcaagtaactacactagagttaattagttcagaaagcatatggctttattatgaaccaaagacatcaacacggacacttaatatgacacgg 827  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  26093290 agttccagtgcaagtaactacactagagttaattagttcagaaagcatatggctttattatgaaccaaagacatcaacacggacacttaacatgacacag 26093389  T
Q  828 acatgttggcaccactagtataaagacatattctagcttctaggtaaatgggtgactctggagttatgcaacacttcacactcgagcttattcttatgat 927  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  26093390 acatgttggcaccactagtataaagac--attctagcttctaggtaaacgggtgactctggagttatgcaacacttcacactcgagcttgttcttatcat 26093487  T
Q  928 gtccatc 934  Q
    || ||||    
T  26093488 gttcatc 26093494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 234 - 428
Target Start/End: Original strand, 26092741 - 26092935
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgccaatgatctaca 333  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26092741 caacataaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccggctccgccaatgatctaca 26092840  T
Q  334 atgtatctctttaatatgttaattactgaaagtaaatgtaccatataaaatagaagaataaaaaccaatgagtaatacaactactgcaatgaaat 428  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26092841 atgtatctctttaatatgttaattactgaaagtaaatgtaccttataaaatagaagaataaaaaccaatgagtaatacaactactgcaatgaaat 26092935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 234 - 416
Target Start/End: Original strand, 25988029 - 25988211
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgccaatgatctaca 333  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||    
T  25988029 caacttaaatatgttgtatgcaaatataatttatatattttagtttattttgatggtggccatcccaaatatttttgtccggctccgccactgatctaca 25988128  T
Q  334 atgtatctctttaatatgttaattactgaaagtaaatgtaccatataaaatagaagaataaaaaccaatgagtaatacaacta 416  Q
    || |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25988129 atatatctctttaatatgttaattactgaaaataaatgtaccttataaaatagaagaataaaaaccaatgagtaatacaacta 25988211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 26092521 - 26092675
Alignment:
Q  18 ttaatctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgagccttgtcagtttatattgaaagggaaagttagtgtatctattagttcc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26092521 ttaatctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgagccttgtcagtttatattgaaagggaaagttagtgtatctattagttcc 26092620  T
Q  118 gagtc----attgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||    ||||||||||| ||||||||||  ||||||||||||||||||||||    
T  26092621 gagtcagttattgatgatttcaagtcactcggaaaacgtaaagtgtcactttaaa 26092675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 97250 - 97348
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||    |||||||||| ||||||||||  || |||||| ||||||||||||    
T  97250 tgtcagtttatattgaaagggaaa-ttagtgcatctattagttccgagtcaattattgatgatttcaagtcactcggaaagcgtaaaatgtcactttaaa 97348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 14200693 - 14200612
Alignment:
Q  241 aatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    ||||||||||||| ||| || ||||||||||| |||||||||||||||| ||||||||| ||||||||||||  |||||||||    
T  14200693 aatatgttgtatgcaaa-attatttatatattctagtttattttgatggcggccatcccaaatatttttgtctggctccgcca 14200612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 14200810 - 14200759
Alignment:
Q  21 atctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgagcct 72  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  14200810 atctgaacccgaacaagtttgtgagaatccaagaattgaagaaaatgagcct 14200759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 143
Target Start/End: Complemental strand, 10895160 - 10895087
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtc----attgatgattttaagtcactc 143  Q
    |||||||||||||||||||||||| |||||| |||||||| |||||||||    ||||||||||| |||||||||    
T  10895160 tgtcagtttatattgaaagggaaa-ttagtgcatctattaattccgagtcaattattgatgatttcaagtcactc 10895087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 14113933 - 14113877
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| ||  ||||||||    
T  14113933 aatatgatttatatattttagtttattttgatggcggcgatcccaaacttttttgtc 14113877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 312
Target Start/End: Original strand, 97408 - 97484
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagttta-ttttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||||||||| || |||||||||||||||||||| || |||| |||| ||||||||| || | |||||||    
T  97408 acttaaatatgttgtatg-aagtatgatttatatattttagtctattttttatggaggccatcccaaacaattttgtc 97484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 27156446 - 27156386
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggcca 295  Q
    |||||||||| ||| ||||| || |||||||||||||||||| ||||||||||||| |||||    
T  27156446 caacttaaatgtgtagtatgcaa-tatgatttatatattttaatttattttgatggcggcca 27156386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Complemental strand, 27156610 - 27156513
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaa 167  Q
    |||||||||| ||| ||||||||| ||| || || ||||||||| ||||||    |||||||||| |||||||| || || ||||||||||||||||||    
T  27156610 tgtcagtttacatttaaagggaaa-ttaatgcatgtattagttctgagtcaattattgatgatttcaagtcacttgaaaatcgtaaagtgtcactttaa 27156513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 31709615 - 31709567
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattt 283  Q
    |||||||||| ||||||||| || ||||||||||||||||||||||||||    
T  31709615 caacttaaatttgttgtatgcaa-tatgatttatatattttagtttattt 31709567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 7171555 - 7171598
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||    
T  7171555 aacctgaacaagttcatgagaatccaagaatcgaagaaaatgag 7171598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 432
Target Start/End: Original strand, 25529127 - 25529202
Alignment:
Q  357 tactgaaagtaaatgtaccatataaaatagaagaataaaaaccaatgagtaatacaactactgcaatgaaatatac 432  Q
    ||||| || |||||||| | |||||||||| ||||||||||| ||  ||||| ||||| || ||||||||||||||    
T  25529127 tactgtaattaaatgtatcttataaaatagtagaataaaaactaaacagtaaaacaaccaccgcaatgaaatatac 25529202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 328
Target Start/End: Original strand, 32505071 - 32505146
Alignment:
Q  254 taaatatgatttatatattttagttta-ttttgatggtggccatccctaatatttttgtccagctccgccaatgat 328  Q
    |||||||||||||||||||||||| || |||| |||| ||||||||| || | |||||||  ||||||||| ||||    
T  32505071 taaatatgatttatatattttagtctattttttatggcggccatcccaaacaattttgtctggctccgccactgat 32505146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 235 - 288
Target Start/End: Complemental strand, 6059803 - 6059751
Alignment:
Q  235 aacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatg 288  Q
    |||||||||||||| |||  || |||||||||||||||||| ||||||||||||    
T  6059803 aacttaaatatgttatatacaa-tatgatttatatattttaatttattttgatg 6059751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 32398497 - 32398530
Alignment:
Q  256 aatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||||||||| ||||||||||||||||    
T  32398497 aatatgatttatatattatagtttattttgatgg 32398530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 74 - 167
Target Start/End: Complemental strand, 51065155 - 51065059
Alignment:
Q  74 gtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaa 167  Q
    ||||||||||||||||||||||| |||||| || ||||||||||||||||    |||||||||||||||||||||| || ||||||||||||||||||    
T  51065155 gtcagtttatattgaaagggaaa-ttagtgcatgtattagttccgagtcaattattgatgattttaagtcactcgaaaagcgtaaagtgtcactttaa 51065059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 48491639 - 48491583
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||  ||||||||    
T  48491639 aatatgatttatatattttagtttattttgatggcggccatcccaaacttttttgtc 48491583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 51286662 - 51286718
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtc 312  Q
    ||||||||||||||||||||||||||||| |||| ||||||||| ||  ||||||||    
T  51286662 aatatgatttatatattttagtttattttcatggcggccatcccaaacttttttgtc 51286718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 27133187 - 27133239
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||||||||| ||| |||||| |||||||||||||||||||| ||||    
T  27133187 acttaaatatgttgtatttaa-tatgatctatatattttagtttatttttatgg 27133239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 1e-19; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 55405022 - 55405120
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||    |||||||||| ||||||||||  || |||||| ||||||||||||    
T  55405022 tgtcagtttatattgaaagggaaa-ttagtgcatctattagttccgagtcaattattgatgatttcaagtcactcggaaagcgtaaaatgtcactttaaa 55405120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 44504912 - 44504964
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    |||||||| |||||||||||| |||||||||||||||||| |||||||||||||    
T  44504912 acttaaatgtgttgtatgtaa-tatgatttatatattttaatttattttgatgg 44504964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 9816430 - 9816497
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    |||||||||||||||||||||||||||||||||| || || ||| ||  ||||||||  |||||||||    
T  9816430 aatatgatttatatattttagtttattttgatggcggtcaccccaaacttttttgtctggctccgcca 9816497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 37466434 - 37466391
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    ||||||||||||||  ||||||||||||||||||||||||||||    
T  37466434 aacctgaacaagttcatgagaatccaagaattgaagaaaatgag 37466391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 238 - 280
Target Start/End: Complemental strand, 53816167 - 53816126
Alignment:
Q  238 ttaaatatgttgtatgtaaatatgatttatatattttagttta 280  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  53816167 ttaaatatgttgtatg-aaatatgatttatatattttagttta 53816126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 14799560 - 14799512
Alignment:
Q  21 atctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    |||| |||||||||||| |  ||||||||||||||||||||||||||||    
T  14799560 atctgaacctgaacaagctcatgagaatccaagaattgaagaaaatgag 14799512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 168
Target Start/End: Original strand, 16401058 - 16401150
Alignment:
Q  79 tttatattgaaagggaaagttagtgtatctattagttccgagtc----attgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||| |||||| || |||||||||||||||    ||||||||||| ||||||||    || ||||||||||||| |||||    
T  16401058 tttatattgaaagggaaa-ttagtgcatgtattagttccgagtcaattattgatgatttcaagtcacttagaaagcgtaaagtgtcacattaaa 16401150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 24535144 - 24535093
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttga 286  Q
    |||||||||| |||| ||||||| ||| |||||||||||||||||||||||||    
T  24535144 caacttaaatgtgttatatgtaa-tataatttatatattttagtttattttga 24535093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 16401216 - 16401270
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    |||||||||| ||||||||| || |||||||||||||||| | |||||||||||||    
T  16401216 caacttaaatgtgttgtatgcaa-tatgatttatatatttaactttattttgatgg 16401270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 27599689 - 27599743
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    |||||||||| | ||||||| || |||||||||| |||||||||||||||||||||    
T  27599689 caacttaaatgtattgtatgcaa-tatgatttatttattttagtttattttgatgg 27599743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 167
Target Start/End: Complemental strand, 24536062 - 24536016
Alignment:
Q  121 tcattgatgattttaagtcactcgataaacgtaaagtgtcactttaa 167  Q
    |||||||| |||||||||||||||| || |||||| |||||||||||    
T  24536062 tcattgataattttaagtcactcgaaaagcgtaaaatgtcactttaa 24536016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 27599233 - 27599282
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca 123  Q
    |||||||||||||||||||||| | |||||| || ||||||||||||||||    
T  27599233 tgtcagtttatattgaaagggata-ttagtgcatgtattagttccgagtca 27599282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 43335500 - 43335455
Alignment:
Q  77 agtttatattgaaagggaaagttagtgtatctattagttccgagtca 123  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||    
T  43335500 agtttatattgaaagggaaa-ttagtgcatgtattagttccgagtca 43335455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 43335350 - 43335298
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgat 287  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||||| ||||||    
T  43335350 caacttaaatgtgttgtatgcaa-tatgattcatatattttagtttactttgat 43335298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 8425415 - 8425317
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||    |||||||||| ||||||||||  || |||||| ||||||||||||    
T  8425415 tgtcagtttatattgaaagggaaa-ttagtgcatctattagttccgagtcaattattgatgatttcaagtcactcggaaagcgtaaaatgtcactttaaa 8425317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 19972120 - 19972022
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||||||||| |||||| |||||||| ||||||||||    |||||||||| ||||||||||  || |||||| ||||||||||||    
T  19972120 tgtcagtttatattgaaagggaaa-ttagtgcatctattaattccgagtcaattattgatgatttcaagtcactcgcaaagcgtaaaatgtcactttaaa 19972022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 235 - 289
Target Start/End: Original strand, 21496851 - 21496904
Alignment:
Q  235 aacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||| ||||||||| || ||||||||||||||||||||||||||||||||    
T  21496851 aacttaaatgtgttgtatgcaa-tatgatttatatattttagtttattttgatgg 21496904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 19971957 - 19971881
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagttta-ttttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||||||||| ||||||||||||||||||||||| || |||| |||| ||||||||| || | |||||||    
T  19971957 acttaaatatgttgtatg-aaatatgatttatatattttagtctattttttatggcggccatcccaaacaattttgtc 19971881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 8425257 - 8425210
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagtttatttt 284  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  8425257 acttaaatatgttgtatg-aaatatgatttatatattttagtctatttt 8425210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 43946417 - 43946473
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||||||||||||||||||||||||| ||| ||||| ||  ||||||||    
T  43946417 aatatgatttatatattttagtttattttgatggcggctatcccaaacttttttgtc 43946473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 234 - 289
Target Start/End: Complemental strand, 14195251 - 14195197
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||  |||||||| || ||||||||||||||||||||||||||||||||    
T  14195251 caacttaaatgagttgtatgcaa-tatgatttatatattttagtttattttgatgg 14195197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 54788856 - 54788953
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaa 167  Q
    |||||| |||||||||||| |||| |||||| || ||||||||||||||||    |||||||||| |||| | |||| || |||||||||| |||||||    
T  54788856 tgtcagattatattgaaagtgaaa-ttagtgcatgtattagttccgagtcaattattgatgatttcaagttattcgaaaagcgtaaagtgtaactttaa 54788953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 54789028 - 54789079
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttga 286  Q
    ||||||||||||||| ||| | |||||| ||||||||||||||||||||||||    
T  54789028 caacttaaatatgttatat-tcaatatggtttatatattttagtttattttga 54789079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 2734301 - 2734344
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||    
T  2734301 aacctgaacaagttcatgagaatccaagaatcgaagaaaatgag 2734344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 6e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 75 - 167
Target Start/End: Complemental strand, 19677041 - 19676946
Alignment:
Q  75 tcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaa 167  Q
    |||||||||||||||||||||| |||||| || ||||||||||||||||    ||||||||||||| |||||||| || |||||| |||||||||||    
T  19677041 tcagtttatattgaaagggaaa-ttagtgcatgtattagttccgagtcaattattgatgattttaaatcactcgaaaagcgtaaattgtcactttaa 19676946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 3781473 - 3781426
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgagcctt 73  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3781473 aacctgaacaagtttgtgagaattcaagaattgaagaaaatgagcctt 3781426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 37259315 - 37259366
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttga 286  Q
    |||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  37259315 caacttaaatatgttgtatgcaa-tatgatttatatattttagtttattttga 37259366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 261 - 312
Target Start/End: Complemental strand, 3781342 - 3781291
Alignment:
Q  261 gatttatatattttagtttattttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||| |||||||||||||||| ||||||||| ||||||||||||    
T  3781342 gatttatatattctagtttattttgatggcggccatcccaaatatttttgtc 3781291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 295
Target Start/End: Complemental strand, 34438455 - 34438395
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggcca 295  Q
    |||||||||| ||||||||| || ||||||||||||||||||||||||||||| || |||||    
T  34438455 caacttaaatttgttgtatgcaa-tatgatttatatattttagtttattttgaaggcggcca 34438395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 7349599 - 7349666
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    |||||||||||||||||||||||||||||||||| || |||||  ||  ||||||||  |||||||||    
T  7349599 aatatgatttatatattttagtttattttgatggcggtcatcctaaacttttttgtctggctccgcca 7349666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 19647159 - 19647213
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatgg 289  Q
    |||||||||| ||||||||| || ||| ||||||||||||||||||||||||||||    
T  19647159 caacttaaatgtgttgtatgcaa-tataatttatatattttagtttattttgatgg 19647213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 234 - 297
Target Start/End: Original strand, 38352142 - 38352204
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggccatc 297  Q
    |||||||||| ||||||||| || ||||||| ||||||||||||||||||| |||| |||||||    
T  38352142 caacttaaatgtgttgtatgcaa-tatgattcatatattttagtttattttaatggcggccatc 38352204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 13626836 - 13626769
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    |||||| | ||||||||||||||||||||||||  ||||| | | ||||||||||||  |||||||||    
T  13626836 aatatggtatatatattttagtttattttgatgacggccacctcaaatatttttgtctggctccgcca 13626769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 22272735 - 22272692
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    ||||||||||||||  ||||||||||||||| ||||||||||||    
T  22272735 aacctgaacaagttcatgagaatccaagaatcgaagaaaatgag 22272692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 323
Target Start/End: Complemental strand, 38395051 - 38394984
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    ||||||||||||||||||||||||||||| || | ||||| ||| ||  ||||||||  |||||||||    
T  38395051 aatatgatttatatattttagtttattttaattgcggccaccccaaacctttttgtctggctccgcca 38394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 263 - 297
Target Start/End: Original strand, 11776133 - 11776167
Alignment:
Q  263 tttatatattttagtttattttgatggtggccatc 297  Q
    ||||||||||||||||||||||||||| |||||||    
T  11776133 tttatatattttagtttattttgatggcggccatc 11776167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 35635007 - 35634958
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttatttt 284  Q
    |||||||||| |||| |||| || |||||||||||||||||||||||||||    
T  35635007 caacttaaatgtgttatatgcaa-tatgatttatatattttagtttatttt 35634958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 37126627 - 37126722
Alignment:
Q  76 cagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||| |    |||||||||| ||||||||||  || |||||| ||||||||||||    
T  37126627 cagtttatattgaaagggaaa-ttagtgcatctattagttccgagttaattattgatgatttcaagtcactcggaaagcgtaaaatgtcactttaaa 37126722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 236 - 323
Target Start/End: Original strand, 37126787 - 37126874
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagttta-ttttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    |||||||||||||||||| ||||||||||||||||||||||| || |||| |||| ||||||||| || | |||||||  |||||||||    
T  37126787 acttaaatatgttgtatg-aaatatgatttatatattttagtctattttttatggcggccatcccaaacaattttgtctggctccgcca 37126874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 380782 - 380835
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatg 288  Q
    |||||||||| ||||||||| || |||||||||||||||||||||||||||||||    
T  380782 caacttaaatttgttgtatgcaa-tatgatttatatattttagtttattttgatg 380835  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 8363914 - 8363947
Alignment:
Q  256 aatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||||||||||||||||||||||||||    
T  8363914 aatatgatttatatattttagtttattttgatgg 8363947  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 21626436 - 21626468
Alignment:
Q  256 aatatgatttatatattttagtttattttgatg 288  Q
    |||||||||||||||||||||||||||||||||    
T  21626436 aatatgatttatatattttagtttattttgatg 21626468  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 8362573 - 8362616
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    ||||||||||||||  ||||||||||| ||||||||||||||||    
T  8362573 aacctgaacaagttcatgagaatccaataattgaagaaaatgag 8362616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 18887121 - 18887164
Alignment:
Q  26 aacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    ||||||||||||||  ||||||| ||||||||||||||||||||    
T  18887121 aacctgaacaagttcatgagaattcaagaattgaagaaaatgag 18887164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 12002218 - 12002185
Alignment:
Q  256 aatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||||||||| ||||||||||||||||    
T  12002218 aatatgatttatatattatagtttattttgatgg 12002185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 21452068 - 21452035
Alignment:
Q  256 aatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||||||||| ||||||||||||||||    
T  21452068 aatatgatttatatattatagtttattttgatgg 21452035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 168
Target Start/End: Complemental strand, 25156586 - 25156541
Alignment:
Q  123 attgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||| |||| ||  ||||||||||||||||||    
T  25156586 attgatgattttaagtcaatcgaaaagtgtaaagtgtcactttaaa 25156541  T

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Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 5086396 - 5086447
Alignment:
Q  21 atctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgagcct 72  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  5086396 atctgaacttgaacaagtttgtgagaatccaagaattgaagaaaatgagcct 5086447  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 43327679 - 43327730
Alignment:
Q  21 atctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgagcct 72  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  43327679 atctgaacttgaacaagtttgtgagaatccaagaattgaagaaaatgagcct 43327730  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 41318109 - 41318207
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||| ||||||||||||||||| |||||| |  ||||| ||||||||||    |||||||||| ||||||||||| || |||||||||||||||||||    
T  41318109 tgtcaggttatattgaaagggaaa-ttagtgcacatattacttccgagtcaattattgatgatttcaagtcactcgaaaatcgtaaagtgtcactttaaa 41318207  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 5088674 - 5088772
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    ||||||||||||||||||| |||| |||||| ||||||||||| | |||||    |||||||||| ||||||||| | || |||||| ||||||||||||    
T  5088674 tgtcagtttatattgaaagagaaa-ttagtgcatctattagtttcaagtcaattattgatgatttcaagtcactcaaaaagcgtaaaatgtcactttaaa 5088772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 256 - 313
Target Start/End: Complemental strand, 9844774 - 9844717
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtcc 313  Q
    |||||||||||||||||||||||||||||||||| || || ||| ||| |||||||||    
T  9844774 aatatgatttatatattttagtttattttgatggcggtcaccccaaatttttttgtcc 9844717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 5088837 - 5088884
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagtttatttt 284  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  5088837 acttaaatatgttgtatg-aaatatgatttatatattttagtctatttt 5088884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 256 - 312
Target Start/End: Original strand, 41318293 - 41318349
Alignment:
Q  256 aatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtc 312  Q
    |||||||||||||||||||||||||||||||||| ||||| ||| ||  ||||||||    
T  41318293 aatatgatttatatattttagtttattttgatggcggccaccccaaacttttttgtc 41318349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 43327773 - 43327820
Alignment:
Q  236 acttaaatatgttgtatgtaaatatgatttatatattttagtttatttt 284  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  43327773 acttaaatatgttgtatg-aaatatgatttatatattttagtctatttt 43327820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 19258416 - 19258383
Alignment:
Q  256 aatatgatttatatattttagtttattttgatgg 289  Q
    ||||||||||||||||||||||||||||||||||    
T  19258416 aatatgatttatatattttagtttattttgatgg 19258383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 168
Target Start/End: Complemental strand, 9844919 - 9844821
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||||||||| ||| ||| || || |||||||| |||||||    |||||||||| |||||||| |  |||  |||||||||||||||||    
T  9844919 tgtcagtttatattgaaaggaaaa-ttactgcatgtattagtttcgagtcaattattgatgatttcaagtcacttggaaaatataaagtgtcactttaaa 9844821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 5885369 - 5885317
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgat 287  Q
    |||||||||| ||||||||| || ||||||| |||| |||||||||||||||||    
T  5885369 caacttaaatgtgttgtatgcaa-tatgattcatatgttttagtttattttgat 5885317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 32382351 - 32382401
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttatttt 284  Q
    |||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  32382351 caacttaaatgtgttgtatgcaaatatgatttatatattttattttatttt 32382401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 32436306 - 32436356
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttatttt 284  Q
    |||||||||| ||||||||| ||||||||||||||||||||| ||||||||    
T  32436306 caacttaaatgtgttgtatgcaaatatgatttatatattttattttatttt 32436356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 164
Target Start/End: Original strand, 18427635 - 18427729
Alignment:
Q  73 tgtcagtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactt 164  Q
    |||||||||||||||||||| ||| ||| |||||  |||||||| ||||||    ||||||||||||||||||||   || |||||||||||||||    
T  18427635 tgtcagtttatattgaaaggtaaa-ttaatgtatgcattagttctgagtcaattattgatgattttaagtcactcagaaagcgtaaagtgtcactt 18427729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 168
Target Start/End: Original strand, 20098965 - 20099059
Alignment:
Q  77 agtttatattgaaagggaaagttagtgtatctattagttccgagtca----ttgatgattttaagtcactcgataaacgtaaagtgtcactttaaa 168  Q
    |||||||||||||| ||||| |||||| |  ||||||||||||||||    |||||||||| || |||||| | || |||||||||||||||||||    
T  20098965 agtttatattgaaaaggaaa-ttagtgcaaatattagttccgagtcaattattgatgatttcaaatcactcaaaaagcgtaaagtgtcactttaaa 20099059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 234 - 288
Target Start/End: Original strand, 20099124 - 20099177
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatg 288  Q
    |||||||||| | ||||||| || ||||| |||||||||||||||||||||||||    
T  20099124 caacttaaatgtattgtatgcaa-tatgaattatatattttagtttattttgatg 20099177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 11827 - 11739
Alignment:
Q  234 caacttaaatatgttgtatgtaaatatgatttatatattttagtttattttgatggtggccatccctaatatttttgtccagctccgcca 323  Q
    |||||||||| |||| |||| || ||||||||||||||||||||||||||| || | ||||| ||| ||  ||||||||  |||||||||    
T  11827 caacttaaatgtgttatatgcaa-tatgatttatatattttagtttattttaattgcggccaccccaaacctttttgtctggctccgcca 11739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 40167 - 40215
Alignment:
Q  21 atctcaacctgaacaagtttgtgagaatccaagaattgaagaaaatgag 69  Q
    |||| |||||||||||| |  ||||||||||||||||||||||||||||    
T  40167 atctgaacctgaacaagctcatgagaatccaagaattgaagaaaatgag 40215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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