View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_11 (Length: 553)
Name: NF7311_low_11
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 487; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Complemental strand, 36151776 - 36151257
Alignment:
| Q |
18 |
agaacacaataaaacctcaaaacaacgactnnnnnnntcattgaatcgctccatcaatattgctcatccatccaccttatagaacaactccaccaaccaa |
117 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151776 |
agaacacaataaaacctcaaaacaacaactaaaaaaatcattgaatcgctccatcaatattgctcatccatccaccttatagaacaactccaccaaccaa |
36151677 |
T |
|
| Q |
118 |
acccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatccttgccatcaccatcatcactaccagcc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151676 |
acccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaatatcagcaggtaaatccttgccatcaccatcatcactaccagca |
36151577 |
T |
|
| Q |
218 |
ccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151576 |
ccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaacccttagctggtgcaggagccagagctggagccttagccggaagaa |
36151477 |
T |
|
| Q |
318 |
caagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagc |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151476 |
caagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtagcattgactgctccggtagc |
36151377 |
T |
|
| Q |
418 |
catactaacttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagttt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36151376 |
catactaacttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttgaacagggttggttaaggtatcgaagttt |
36151277 |
T |
|
| Q |
518 |
gaaatagaaacgaatgaagc |
537 |
Q |
| |
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|||||||||||||||||||| |
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| T |
36151276 |
gaaatagaaacgaatgaagc |
36151257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 91 - 537
Target Start/End: Complemental strand, 36155089 - 36154643
Alignment:
| Q |
91 |
accttatagaacaactccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatcc |
190 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36155089 |
accttatagaacagctccaccaaccaaacccattccaaaaacaacaacagcattcacccacatcacagaccctgcagcagaaacatcagcaggtaaatcc |
36154990 |
T |
|
| Q |
191 |
ttgccatcaccatcatcactaccagccccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaacccttagctggtgcaggag |
290 |
Q |
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|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154989 |
ttaccatcaccatcatcactaccagcaccactaccatcatctgcaactgaagaattcgtttttccagccttaggcaacaaacccttagctggtgcaggag |
36154890 |
T |
|
| Q |
291 |
ccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggt |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154889 |
ccagagctggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggt |
36154790 |
T |
|
| Q |
391 |
aacggtagcattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttga |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36154789 |
aacggtagcattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagcctagcatcatcaccggcttgtgtttga |
36154690 |
T |
|
| Q |
491 |
acagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagc |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36154689 |
acagggttggttaaggtatcgaagtttgaaatagaaacgaatgaagc |
36154643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 299 - 516
Target Start/End: Complemental strand, 5274006 - 5273786
Alignment:
| Q |
299 |
ggagccttagccggaagaacaagatcaagaggcataagtaccttatcaacctgataaatagcaagtttgctgtcggtataaacagtaccggtaacggtag |
398 |
Q |
| |
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||||| ||||| ||||| |||||||||||||| | ||| ||||| ||||||||||| ||||| |||||| |||| || ||||| || || |||||||| | |
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| T |
5274006 |
ggagctttagcaggaagcacaagatcaagaggaacaagaaccttgtcaacctgatatatagctagtttgttgtctgtgtaaactgttccagtaacggttg |
5273907 |
T |
|
| Q |
399 |
cattgactgctccggtagccatactaacttgactgccaccataagtagtgacgttcagttgaagcc---tagcatcatcaccggcttgtgtttgaacagg |
495 |
Q |
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|||| || | || || | ||| || || || || || ||| |||| || || || ||||| |||| | || ||||||||||||||||||||||| || |
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| T |
5273906 |
cattaaccgtgccagttgtcatgctgacatggctaccgccagaagtggttacattaagttgtagccttttggcgtcatcaccggcttgtgtttgaaccgg |
5273807 |
T |
|
| Q |
496 |
gttggttaaggtatcgaagtt |
516 |
Q |
| |
|
|||||||||||| |||||||| |
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| T |
5273806 |
gttggttaaggtgtcgaagtt |
5273786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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