View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_12 (Length: 523)
Name: NF7311_low_12
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 240 - 502
Target Start/End: Original strand, 6566811 - 6567071
Alignment:
| Q |
240 |
ctgtggaagctttggttacagtatatgccgtgctgtttctcaacttgaaatggggagcttggccgttgcaagcttaggaacaaaaggaaacataaacttg |
339 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
6566811 |
ctgtggaagctttggttacagtat--gccgtgctgtttctcaacttgaaatggggagcttggcagttgcaagcttcggaacaaaaggaaacataaatttg |
6566908 |
T |
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| Q |
340 |
ctgcatgattttgatagcccattcactgcagaggccggggttaaggttagcaggatttacacaagtctagnnnnnnnctttattgacatcagtactgtgc |
439 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
6566909 |
ctgcatgattttgatagcccattcactgcagagtccggggttaaggttagcaggatttacacaagtctagtttttttctttattgacatcagtactgtgc |
6567008 |
T |
|
| Q |
440 |
atttgttgaatatgttgaaaggatctgattgttcgtttttgactgaggaacagatggtctcca |
502 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6567009 |
atttgttgaatatgttgaaaggatctgattgttcgtttttgactgaggaacagatggtctcca |
6567071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 240 - 502
Target Start/End: Original strand, 6652264 - 6652524
Alignment:
| Q |
240 |
ctgtggaagctttggttacagtatatgccgtgctgtttctcaacttgaaatggggagcttggccgttgcaagcttaggaacaaaaggaaacataaacttg |
339 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
6652264 |
ctgtggaagctttggttacagtat--gccgtgctgtttctcaacttgaaatggggagcttggccgttgcaagcttcggaacaaaaggaaacataaatttg |
6652361 |
T |
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| Q |
340 |
ctgcatgattttgatagcccattcactgcagaggccggggttaaggttagcaggatttacacaagtctagnnnnnnnctttattgacatcagtactgtgc |
439 |
Q |
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| T |
6652362 |
ctgcatgattttgatagcccattcactgcagaagccggagttaaggttagcaggatttacacaagtctagtttttttctttatggacatcagtattgcgc |
6652461 |
T |
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| Q |
440 |
atttgttgaatatgttgaaaggatctgattgttcgtttttgactgaggaacagatggtctcca |
502 |
Q |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
6652462 |
atttgttgaatatgttgaaaggatctgattgtttgtttttgattgaggaacagatggtctcca |
6652524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 240 - 502
Target Start/End: Original strand, 6732664 - 6732924
Alignment:
| Q |
240 |
ctgtggaagctttggttacagtatatgccgtgctgtttctcaacttgaaatggggagcttggccgttgcaagcttaggaacaaaaggaaacataaacttg |
339 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||| |
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| T |
6732664 |
ctgtggaagctttggttacagtat--gccgtgctgtttctcaacttgaaatggggagcttggctgttgcaagcttcggaacaaaaggaaacataaatttg |
6732761 |
T |
|
| Q |
340 |
ctgcatgattttgatagcccattcactgcagaggccggggttaaggttagcaggatttacacaagtctagnnnnnnnctttattgacatcagtactgtgc |
439 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| || || |
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| T |
6732762 |
ctgcatgattttgatagcccattcactgcagaagccggtgttaaggttagcaggatttacacaagtctagtttttttctttatggacatcagtattgcgc |
6732861 |
T |
|
| Q |
440 |
atttgttgaatatgttgaaaggatctgattgttcgtttttgactgaggaacagatggtctcca |
502 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
6732862 |
atttgttgaatatgttgaaaggatctgattgtttgtttttgattgaggaacagatggtctcca |
6732924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 6652128 - 6652214
Alignment:
| Q |
66 |
ggggaaaggtaaccaaaaagaagagcgaatagagaaaagctgccaaacataacaaataacagggagataatcaatcaaacagaagaa |
152 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6652128 |
ggggaaaggcaaccaaaaagaagagcgaatagagaaaagcaaccaaacataacaattaacagggagataatcaatcaaacagaagaa |
6652214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 66 - 152
Target Start/End: Original strand, 6732528 - 6732614
Alignment:
| Q |
66 |
ggggaaaggtaaccaaaaagaagagcgaatagagaaaagctgccaaacataacaaataacagggagataatcaatcaaacagaagaa |
152 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
6732528 |
ggggaaaggcaaccaaaaagaagagcgaatagagaaaagcaaccaaacataacaattaacagtgagataatcaatcaaacagaagaa |
6732614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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