View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_13 (Length: 513)
Name: NF7311_low_13
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 1 - 498
Target Start/End: Original strand, 38724356 - 38724857
Alignment:
| Q |
1 |
ttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggccttcattacttcaacaattgcactattaaaggctcagttgatttca |
100 |
Q |
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| T |
38724356 |
ttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggccttcattacttcaacaattgcactattaaaggctcagttgatttca |
38724455 |
T |
|
| Q |
101 |
tttgtggtcatgggaaatccctctatgaggtaatctttccattcatgagttcaagttcaaatatgcacatttgaaaaacttatgaaatgggcttttatgg |
200 |
Q |
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| T |
38724456 |
tttgtggtcatgggaaatccctctatgaggtaatctttccattcatgagttcaagttcaaatatgcacatttgaaaaacttatgaaatgggcttttatgg |
38724555 |
T |
|
| Q |
201 |
ccaagtgggttgttaatgagttataatagaaagattttgataatattaataaaagtacagttttcatgtctgccactat----aatagcttgttgcctaa |
296 |
Q |
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| T |
38724556 |
ccaagtgggttgttaatgagttataatagaaagattttgataatattaataaaagtacaattttcatgtctgccactatatacaatagcttgttgcctaa |
38724655 |
T |
|
| Q |
297 |
tcaaccattgcctagtttctgattgaattggtatgcagggttgcactataaggtccatagccaacaacatgacctccattacagctcaaagtggttcaaa |
396 |
Q |
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| T |
38724656 |
tcaaccattgcctagtttctgattgaattggtatgcagggttgcactataaggtccatagccaacaacatgacctccattacagctcaaagtggttcaaa |
38724755 |
T |
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| Q |
397 |
tccgtcatatgatagtggattttcctttaaaaatagtatggtaataggtgatggaccaacttatcttggaagaccatggggaaattattcacaagttgtt |
496 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38724756 |
tccgtcatatgatagtggattttcctttaaaaatagtatggtaataggtgatggaccaacttatcttggaagaccatggggaaattattcacaagttgtt |
38724855 |
T |
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| Q |
497 |
tt |
498 |
Q |
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| T |
38724856 |
tt |
38724857 |
T |
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