View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_14 (Length: 490)
Name: NF7311_low_14
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 42520288 - 42520748
Alignment:
| Q |
18 |
gtatctaaggcaatcatagaaggtattagagaatattccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42520288 |
gtatctaaggcaatcatagaaggtattagagaatattccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattc |
42520387 |
T |
|
| Q |
118 |
tgcacttcttaccaaatattagtccaaccaactatgnnnnnnnnnnnnnnnnncatgcatgatcatttcaagaaaacgttagtttgagcaaaaaattaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42520388 |
tgcacttcttaccaaatattagtccaaccaactatgaaaaataaaataaaaaacatgcatgatcatttcaagaaaacgttagtttgagcaaaaaatgaag |
42520487 |
T |
|
| Q |
218 |
atattttgaaccattttttattgtgtcggaacataacatattccattttttgatgaattttaattcatgacagaagatttaggacaagtgatgttcctag |
317 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42520488 |
atattttgaacc-ttttttattgtgtcggaacataacatattccattttttgatgaatttttattcatgacagaagatttaggacaagtgatgttcctag |
42520586 |
T |
|
| Q |
318 |
ccttgtgtctaaaggggcacctgagttctgcaccgtgtacattatttccaaaggaaaaatccaatccgttaaaactgctacttctccattaacaccgaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42520587 |
ccttgtgtctaaaggggcacctgagttctgcaccgtgtacattatttccaaaggaaaaatccaatctgttaaaactgctacttctccattaacaccgaaa |
42520686 |
T |
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| Q |
418 |
gccatgccgcgtaacaatgcattgcagccacaacaaagtcctgatagaatcgatgtacaaca |
479 |
Q |
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| T |
42520687 |
gccatgccgcgtaacaatgcattgcagccacaacaaagtcctgatagaatcaatgtacaaca |
42520748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 42528464 - 42528939
Alignment:
| Q |
18 |
gtatctaaggcaatcatagaaggtattagagaatattccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42528464 |
gtatctaaggcaatcatagaaggtattagagaatattccattgaacttttggttcttggggcaccatcaagaagtggtcttgtgaggtaactattcattc |
42528563 |
T |
|
| Q |
118 |
tgcacttcttaccaaatattagtccaaccaactatgnnnnnnnnnnnnnnnnncatgcatgatcatttcaagaaaacgttagtttgagcaaaaaattaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42528564 |
tgcacttcttaccaaatattagtccaaccaactatgaaaattaaaataaaaaacatgcatgatcatttcaagaaaacgttagtttgagcaaaaaatgaag |
42528663 |
T |
|
| Q |
218 |
atattttgaaccattttttattgtgtcggaacataacatattccattttttgatgaattttaattcatgacagaagatttaggacaagtgatgttcctag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||||||||| |
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| T |
42528664 |
atattttgaaccattttttattgtgtcggaacataacatattcctttttttgatgaattataatccataacagaagatttaggacaagtgatgttcctag |
42528763 |
T |
|
| Q |
318 |
ccttgtgtctaaaggggcacctgagttctgcaccgtgtacattatttccaaaggaaaaatccaatccgttaaaactgctacttctccattaacaccgaaa |
417 |
Q |
| |
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||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||| |
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| T |
42528764 |
cctcgtgtctaaaggggcacctgaattctgcactgtgtacattatttccaaaggaaaaatccaatctgtaaaaactgctacttctccattaacattgaaa |
42528863 |
T |
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| Q |
418 |
gccatgccgcgtaa--caatg-------cattgcagccacaacaaagtcctgatagaatcgatgtacaacaccaaa |
484 |
Q |
| |
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|||||||||||||| || || || ||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
42528864 |
gccatgccgcgtaatgcattgcagcctccacagcagccacaacaaagtcctaatagaatcgatgtacaacaacaaa |
42528939 |
T |
|
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