View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_15 (Length: 474)

Name: NF7311_low_15
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_15
NF7311_low_15
[»] chr2 (6 HSPs)
chr2 (19-459)||(35182028-35182468)
chr2 (139-459)||(35053321-35053641)
chr2 (143-459)||(35176193-35176509)
chr2 (143-422)||(35104196-35104475)
chr2 (143-422)||(35044357-35044636)
chr2 (265-422)||(35151734-35151891)
[»] chr5 (1 HSPs)
chr5 (233-424)||(498557-498748)
[»] chr7 (6 HSPs)
chr7 (232-423)||(25639059-25639250)
chr7 (232-423)||(25477259-25477450)
chr7 (258-423)||(25434782-25434947)
chr7 (233-299)||(25486063-25486129)
chr7 (226-299)||(25447127-25447200)
chr7 (342-412)||(25485950-25486020)


Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Original strand, 35182028 - 35182468
Alignment:
Q  19 ccctgaaaacattaagattaaacatgttacaagaggtaaggtggannnnnnntgggagtcaaaatggttgaataaatttcaactatgaaatgggaaaaga 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35182028 ccctgaaaacattaagattaaacatgttacaagaggtaaggtggagggggggtgggaatcaaaatggttgaataaatttcaactatgaaatgggaaaaga 35182127  T
Q  119 agttttaattttttaaaaggtatcttgttaccgtttctgtcatcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182128 agttttaattttttaaaaggtatcttgttaccgtttctgtcatcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaa 35182227  T
Q  219 aggaaactgttgccgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaa 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  35182228 aggaaactgttgccgaacaattttcttccctaattcttgcaacatttcatgcataagaatttcattatttctaatagttatgaatgacctctcaatcaaa 35182327  T
Q  319 ctttgaattccaatatgagggtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaata 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35182328 ctttgaattccaatatgagggtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaata 35182427  T
Q  419 tttctcggtcctctgaatgtaatccctcaaaacttacctga 459  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35182428 tttctcggtcctctgaatgtaatccctcaaaacttacctga 35182468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 139 - 459
Target Start/End: Original strand, 35053321 - 35053641
Alignment:
Q  139 tatcttgttaccgtttctgtcatcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaa 238  Q
    ||||||||||||||||||||||||||||| |  | |||||| ||||||||||||||||||||||||||||||||||    |||||| ||||||||||| |    
T  35053321 tatcttgttaccgtttctgtcatcatgactggattgaaatcctcataaagccacaatctactccacgatcctggttcttcaggaaattgttgccgaacta 35053420  T
Q  239 ttttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagg 338  Q
    |||||||||| || |||||||||||||| ||||||||||| || | ||||||||||||||||||||| || |||||||||| |||||||||||  |||||    
T  35053421 ttttcttccccaactcttgcaacatttcgtgcatatgaatctcctgatttctaatagttatgagtgaactttcaatcaaaccttgaattccaaggtgagg 35053520  T
Q  339 gtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttctcggtcctctgaatgt 438  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  35053521 gtgcaacccacaagcatctagaattcgcttcacatattcttctttctcccctttaaagaaacaagcaatatgcaaaaatatttctcggtcctccgaatgt 35053620  T
Q  439 aatccctcaaaacttacctga 459  Q
    ||||||||||||| |||||||    
T  35053621 aatccctcaaaacatacctga 35053641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 143 - 459
Target Start/End: Original strand, 35176193 - 35176509
Alignment:
Q  143 ttgttaccgtttctgtcatcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaatttt 242  Q
    |||||||| | |||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||| |||| |  |||||| ||||| ||||| |||||    
T  35176193 ttgttaccatctctgtcatcatgacagggtagaaatcctcaaaaagccacaatctactccacaatccaggttcgccaggaaattgttgtcgaactatttt 35176292  T
Q  243 cttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgc 342  Q
    ||| || |||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||||| ||||| |||    
T  35176293 ctttcccaattcttgcaacatttcatgcatatgaatttcctgatttctaatagttacgagtgacctctcaatcaaactttgaatgccaatgtgaggatgc 35176392  T
Q  343 aacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttctcggtcctctgaatgtaatc 442  Q
    |||||||||||||| ||||||||||||||||||||||| |||   |||||||||||||| ||||||||||||||||||||| |||| ||| |||||||||    
T  35176393 aacccacaagcatcgagaattcgcttcacataatcttctttcattcctttaaagaaacaggcaatatgcagaaatatttcttggtcatctaaatgtaatc 35176492  T
Q  443 cctcaaaacttacctga 459  Q
    |||  ||||||||||||    
T  35176493 cctgcaaacttacctga 35176509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 143 - 422
Target Start/End: Original strand, 35104196 - 35104475
Alignment:
Q  143 ttgttaccgtttctgtcatcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaatttt 242  Q
    ||||||||||||||||||||| ||||   || |||||||  ||  |||| ||||||||||| || ||||| |    ||||||  | ||||||||||||||    
T  35104196 ttgttaccgtttctgtcatcaagacatgataaaaatcattgtatcgccataatctactccaagagcctggctcttcaggaaatcggtgccgaacaatttt 35104295  T
Q  243 cttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgc 342  Q
    |||||| |||||||| ||||| |||||||||||||| || |  ||| | || || ||||||||  ||||||  |  || ||||||||||| |||||||||    
T  35104296 cttccccaattcttgtaacatatcatgcatatgaatctcctggttttttatggtaatgagtgatttctcaaggattctctgaattccaatgtgagggtgc 35104395  T
Q  343 aacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttc 422  Q
    || ||||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||| |||| |||||||||    
T  35104396 aatccacaagcatctagaattctctttacataaacttccctctcccctttaaagaaacaagcaatgtgcataaatatttc 35104475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 143 - 422
Target Start/End: Original strand, 35044357 - 35044636
Alignment:
Q  143 ttgttaccgtttctgtcatcatgacagagtagaaatcatcataaagccacaatctactccacgatcctggttggaaaggaaactgttgccgaacaatttt 242  Q
    |||||||||||| ||||||||  |||   ||||||||||   |  |||| ||||||||||| |||||||| |     ||||| || ||||||||||||||    
T  35044357 ttgttaccgtttttgtcatcaaaacatgatagaaatcattgcatcgccataatctactccatgatcctggctcttcgggaaattggtgccgaacaatttt 35044456  T
Q  243 cttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgc 342  Q
    |||||| | |||||| ||||| |||||||||||||| || |  ||| |||| || || |||||  ||||||  |  |||||||||||||| |||||||      
T  35044457 cttccccagttcttgtaacatatcatgcatatgaatctcctcgtttttaatggtaataagtgatttctcaaggattctttgaattccaatttgagggtat 35044556  T
Q  343 aacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttc 422  Q
    || ||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||||||||||||||    
T  35044557 aatccacaagcatctagaattcgctttacataatcttccctctcccctttaaagaagcaagcaatgtgcagaaatatttc 35044636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 265 - 422
Target Start/End: Complemental strand, 35151891 - 35151734
Alignment:
Q  265 tcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatctagaattc 364  Q
    |||||||||||||| || | |||| | || || ||||||||  ||||||  |  |||||||||||||| |||||||| || |||||||||||||||||||    
T  35151891 tcatgcatatgaatctcctgattttttatggtaatgagtgatttctcaagaattctttgaattccaatgtgagggtgtaatccacaagcatctagaattc 35151792  T
Q  365 gcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttc 422  Q
     ||||||| |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  35151791 tcttcacacaatcttccctctccactttaaagaaacaagcaatgtgcagaaatatttc 35151734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 7e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 233 - 424
Target Start/End: Original strand, 498557 - 498748
Alignment:
Q  233 gaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaat 332  Q
    ||||||||| | |||| || |||||||||||| ||||||||||||||||||| |||||||| |||||||||||  | |||   | |  | ||||||||||    
T  498557 gaacaatttgcctccccaactcttgcaacattccatgcatatgaatttcattgtttctaattgttatgagtgatttttcagcaataagtggaattccaat 498656  T
Q  333 atgagggtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttctc 424  Q
    || ||||||||| ||||||||||||||||||| | | ||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  498657 atcagggtgcaatccacaagcatctagaattccccttacataatccgccttctcccctttaaagaaacaagcaatatgcagaaatatttctc 498748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 232 - 423
Target Start/End: Complemental strand, 25639250 - 25639059
Alignment:
Q  232 cgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaa 331  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||| | |||| |||| ||||||| |||  | |||   | |  | |||||||||    
T  25639250 cgaacaattttcttccccaactcttgcaacatttcatgcatatgaatttcctcatttttaatggttatgactgatttttcagcaagaagtggaattccaa 25639151  T
Q  332 tatgagggtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttct 423  Q
    ||| ||| ||||| ||||||||||||||||||||  | |||||||||| | |||| |||||||| |||||||||| ||||||||||||||||    
T  25639150 tatcaggatgcaatccacaagcatctagaattcggcttacataatctttcctctctcctttaaaaaaacaagcaacatgcagaaatatttct 25639059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 232 - 423
Target Start/End: Original strand, 25477259 - 25477450
Alignment:
Q  232 cgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaa 331  Q
    ||||||||||  ||||| || ||||||||||||||||||||||||||||| |  |||||||||||||| |||||  | ||||  | |  | |||||||||    
T  25477259 cgaacaatttgtttccccaactcttgcaacatttcatgcatatgaatttcttggtttctaatagttattagtgatttttcaacaagaagtggaattccaa 25477358  T
Q  332 tatgagggtgcaacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttct 423  Q
    ||| ||| ||||| |||||||||| |||||||| | | |||||||||||| ||||||| | |||||| |||||||  |||| ||||||||||    
T  25477359 tattaggctgcaatccacaagcatgtagaattctccttacataatcttccctctccccgtcaaagaagcaagcaacgtgcaaaaatatttct 25477450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 258 - 423
Target Start/End: Original strand, 25434782 - 25434947
Alignment:
Q  258 caacatttcatgcatatgaatttcattatttctaatagttatgagtgacctctcaatcaaactttgaattccaatatgagggtgcaacccacaagcatct 357  Q
    |||||||||||||||||||||||||| ||||||||||||||| || ||  ||||||  | |  | ||||  |||||| ||| | || ||||||| ||| |    
T  25434782 caacatttcatgcatatgaatttcatcatttctaatagttattagcgatttctcaacaagaagtggaatatcaatatcaggattcagcccacaaacattt 25434881  T
Q  358 agaattc-gcttcacataatcttccttctcccctttaaagaaacaagcaatatgcagaaatatttct 423  Q
    ||||||| |||| |||||||| | | ||||||| |||||||||||||||| ||||| ||||||||||    
T  25434882 agaattctgctt-acataatccttcctctccccattaaagaaacaagcaacatgcaaaaatatttct 25434947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 299
Target Start/End: Complemental strand, 25486129 - 25486063
Alignment:
Q  233 gaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttat 299  Q
    ||||||||| ||||||||| |  |||||||||||||| ||||||||||| | ||||||||| |||||    
T  25486129 gaacaatttgcttccctaacttgtgcaacatttcatggatatgaatttcctcatttctaatggttat 25486063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 25447200 - 25447127
Alignment:
Q  226 tgttgccgaacaattttcttccctaattcttgcaacatttcatgcatatgaatttcattatttctaatagttat 299  Q
    |||| ||||||||||| |||||| || |  ||||||||||||||||||| |||||| | |||| ||||||||||    
T  25447200 tgttcccgaacaatttgcttccccaacttgtgcaacatttcatgcatataaatttcctcatttataatagttat 25447127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 342 - 412
Target Start/End: Complemental strand, 25486020 - 25485950
Alignment:
Q  342 caacccacaagcatctagaattcgcttcacataatcttccttctcccctttaaagaaacaagcaatatgca 412  Q
    |||| |||||||||||||||||||  | |||||||| | | |||| || |||||||||||||||| |||||    
T  25486020 caactcacaagcatctagaattcggcttacataatccttcctctctccattaaagaaacaagcaacatgca 25485950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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