View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_17 (Length: 434)
Name: NF7311_low_17
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_17 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 181 - 434
Target Start/End: Complemental strand, 31797928 - 31797675
Alignment:
| Q |
181 |
agactgatccatacctggactggaattacatttatctcagtttatagcaagtcat--gaaaaagcggtatgatctgtcctttgcaacacagagacaagta |
278 |
Q |
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| T |
31797928 |
agactgatccatacctggactggaattacatttatctcagttta--gcaagtcatatgaaaaagcggtacgatccgtcctttgcaacacagagacaagta |
31797831 |
T |
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| Q |
279 |
atgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagattatacttgttgcac |
378 |
Q |
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| T |
31797830 |
atgccactagaataaataagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagattatacttgttgcac |
31797731 |
T |
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| Q |
379 |
acaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttc |
434 |
Q |
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| T |
31797730 |
acaaactttgtataatgatgctagtagttggtgtacaacgagcagtgccatttttc |
31797675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 31788225 - 31788128
Alignment:
| Q |
36 |
ccaacaacctgaaaggaacaaaagccataaaattctgatggaataacagaagaataattagcaagatcaaataaaaattattatatggaagaaaacag |
133 |
Q |
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| T |
31788225 |
ccaacaacctgaaaggaacaaaaaccataaaattaggatggaataacagaagattaactagcaagagcaaataaaaattattatatggcagaaaacag |
31788128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 31787378 - 31787308
Alignment:
| Q |
296 |
aagatcagaaatttcaattatatgcacgaagatatgttttctcataagaactttggagttgaaacagatta |
366 |
Q |
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| T |
31787378 |
aagatcggacatttcaattatatgcacgaagatatgatttctcacaagaactttggagttgaaagagatta |
31787308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 131 - 177
Target Start/End: Complemental strand, 31788059 - 31788013
Alignment:
| Q |
131 |
cagatcagggaatcttgaagatgattcatctccatttcctgaaaaaa |
177 |
Q |
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| T |
31788059 |
cagatcagggaatctcgaagttgattcatctccatttcttgaaaaaa |
31788013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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