View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_19 (Length: 431)

Name: NF7311_low_19
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_19
NF7311_low_19
[»] chr1 (10 HSPs)
chr1 (111-414)||(1794134-1794440)
chr1 (21-338)||(2020975-2021293)
chr1 (27-185)||(3374067-3374225)
chr1 (26-183)||(3363966-3364123)
chr1 (29-185)||(3380195-3380351)
chr1 (73-183)||(6599646-6599756)
chr1 (113-313)||(2007930-2008130)
chr1 (89-253)||(3342695-3342859)
chr1 (27-155)||(3366361-3366489)
chr1 (73-185)||(4333561-4333673)
[»] chr2 (5 HSPs)
chr2 (28-185)||(20936091-20936248)
chr2 (28-185)||(20954332-20954489)
chr2 (26-185)||(39275231-39275390)
chr2 (26-54)||(20924479-20924507)
chr2 (113-157)||(20924566-20924610)
[»] chr5 (1 HSPs)
chr5 (113-183)||(17971163-17971233)
[»] chr4 (2 HSPs)
chr4 (113-182)||(21238956-21239025)
chr4 (224-292)||(21239067-21239135)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 111 - 414
Target Start/End: Original strand, 1794134 - 1794440
Alignment:
Q  111 atatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgt 210  Q
    ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  1794134 atatctgaattagattttatcagatttctacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcatacgtcggatcagaggtggtgt 1794233  T
Q  211 taaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatat 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1794234 taaaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcgtcataatgttttttattcaactcttaaatgcatat 1794333  T
Q  311 taccatttgtctcttt---ttaatgaaccaagaatcaagaatgctcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattct 407  Q
    ||||||||||||||||   |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1794334 taccatttgtctctttatattaatgaaccaagaataaagaatggtcacctttcatgacttcagttgtttttctatagacaaatgttactttggttattct 1794433  T
Q  408 acaatgt 414  Q
    |||||||    
T  1794434 acaatgt 1794440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 338
Target Start/End: Original strand, 2020975 - 2021293
Alignment:
Q  21 cctgactcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaat 120  Q
    |||| |||||||||||||||| || |||||| ||  ||| ||| |||||||  |||| ||| |||||| || || ||||||| |||||  | | ||||||    
T  2020975 cctgcctcctattgttgggaaaatgtctttttggagccatccatacccatccaagtgtgacatgtgtgtattgaaggcatctctggtatgaaagctgaat 2021074  T
Q  121 tagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgttaaaattatt 220  Q
    |||||||| | || ||| ||||||| ||||| ||| | |||||| | |||   |||||||||| ||   ||||||||||  || || ||| | || |  |    
T  2021075 tagattttttgagatttctacttctctattcgcctatgctagaaaagatggaagtgaagcctgatttgaacgtcggatctaagttgatgtcagaactgct 2021174  T
Q  221 gcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatattacca-tttg 319  Q
    ||  |||||||| ||||| | ||||||||||||  ||||   || |||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||||    
T  2021175 gcgattcaagagagcctccgcacaagctgaagttgtttaccttggggaagtctcttcatgatgttttttattcaactcttaaatgtatattgccattttg 2021274  T
Q  320 tctctttttaatgaaccaa 338  Q
    | ||||||| |||| ||||    
T  2021275 tttctttttcatgatccaa 2021293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 27 - 185
Target Start/End: Original strand, 3374067 - 3374225
Alignment:
Q  27 tcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagatt 126  Q
    |||||||||||||||||||||||||| || |||||||  |||||   ||| | || ||||   ||||||||||||| |||||  | ||| ||||||||||    
T  3374067 tcctattgttgggaagatatcttttcagggccagccatgcccattcaagtacaacatgtgacaatagatggcatctctggtatcagatcagaattagatt 3374166  T
Q  127 ttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    ||||  ||||| |||||| |||||||||||| |||||| | |||| |||||||| ||||    
T  3374167 ttattcggtttctacttcgatattctcctgtgctagaaaagatgattgtgaagcatgtt 3374225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 3363966 - 3364123
Alignment:
Q  26 ctcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagat 125  Q
    |||||||||||||||| |||| |||||||  ||| | |  ||||| | |||||||| |||| ||||  ||||||||| |||    | |||||||||||||    
T  3363966 ctcctattgttgggaaaatatattttcggagccaacaatgcccattgaagtgcgacatgtgaggatgcatggcatctctggctttaaatctgaattagat 3364065  T
Q  126 tttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctg 183  Q
    |||||||| ||| | ||| ||||||||||||| |||||| | |||| |||| ||||||    
T  3364066 tttatcagatttctgcttttatattctcctgtactagaaaagatgattgtggagcctg 3364123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 29 - 185
Target Start/End: Original strand, 3380195 - 3380351
Alignment:
Q  29 ctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagatttt 128  Q
    |||||||||||||| |||||||||  | |||| ||  |||||  ||||||||| ||||   ||||||| ||||| |||||  | ||| ||||||||||||    
T  3380195 ctattgttgggaagttatcttttcaaggccagtcaatcccattcgagtgcgacatgtgacaatagatgacatctctggtatcaaatcggaattagatttt 3380294  T
Q  129 atcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    ||  ||||| ||||||| ||||||||| | |||||| | |||| |||||||| ||||    
T  3380295 attcggtttctacttctctattctcctatgctagaaaagatgattgtgaagcatgtt 3380351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 6599756 - 6599646
Alignment:
Q  73 gagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgac 172  Q
    ||||||||| |||| | ||||||||||||| |||||  | | |||| ||||| || ||||| ||| ||||||||||||||||||| ||||||   |||||    
T  6599756 gagtgcgacatgtgagaatagatggcatctctggtatcaaacctgagttagacttcatcagctttatacttctatattctcctgtgctagaaaggatgac 6599657  T
Q  173 tgtgaagcctg 183  Q
    |||||| ||||    
T  6599656 tgtgaaacctg 6599646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 2007930 - 2008130
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttcacacgtcggatcagaggtggtgtta 212  Q
    |||||||||||||||||| || ||| |||||||  |||| ||||| |||||| | ||||  ||||||||   ||   |||| |||||  || || ||| |    
T  2007930 atctgaattagattttatgagatttctacttctccattcgcctgtgctagaaaagatgagagtgaagcccaattttaacgttggatcgaagttgatgtca 2008029  T
Q  213 aaattattgcagttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttattcaactcttaaatgcatatta 312  Q
     |||| ||||  |||||||| ||||||| ||||||||||||  ||||   || |||||||| ||  | || |||||||||||||||||||||| ||||||    
T  2008030 gaattgttgcgattcaagagagcctcagcacaagctgaagttgtttaccttggggaagtctattggtgatattttttattcaactcttaaatgtatatta 2008129  T
Q  313 c 313  Q
    |    
T  2008130 c 2008130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 89 - 253
Target Start/End: Original strand, 3342695 - 3342859
Alignment:
Q  89 gatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtttca 188  Q
    |||||||||||||| |||||  | |||||||||||||||||||   ||| ||||||||||||||||||  |||||| | |||   ||||||||| || ||    
T  3342695 gatagatggcatctctggtaccaaatctgaattagattttatccaatttctacttctatattctcctgatctagaaaagatgttcgtgaagcctattgca 3342794  T
Q  189 cacgtcggatcagaggtggtgttaaaattattgcagttcaagagggcctcaggacaagctgaagt 253  Q
     ||||| || | |||||  ||  |||| || | | ||||||||| || ||| |||||||||||||    
T  3342795 aacgtcagaactgaggtaatgacaaaactaattcggttcaagagagcatcaagacaagctgaagt 3342859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 3366361 - 3366489
Alignment:
Q  27 tcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagatt 126  Q
    |||||||||| | ||||||||||||| || |||||||  |||||  ||||||||| ||||   ||||||||||||| |||||  | ||| ||| ||||||    
T  3366361 tcctattgttcgtaagatatcttttcagggccagccatgcccattcgagtgcgacatgtgacaatagatggcatctctggtatcaaatcggaactagatt 3366460  T
Q  127 ttatcaggtttttacttctatattctcct 155  Q
    ||||  ||||| ||||||  |||||||||    
T  3366461 ttattcggtttctacttcgctattctcct 3366489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 4333673 - 4333561
Alignment:
Q  73 gagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgac 172  Q
    ||||||||| ||||  |||||||||||||| |||||     ||||||||| |||| ||||| ||| |||||||||||||||  || |||||| | ||||     
T  4333673 gagtgcgacatgtgacgatagatggcatctctggtacccagtctgaattaaatttgatcagatttctacttctatattctctggtgctagaaaagatgat 4333574  T
Q  173 tgtgaagcctgtt 185  Q
    |||||||||||||    
T  4333573 tgtgaagcctgtt 4333561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 20936091 - 20936248
Alignment:
Q  28 cctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattt 127  Q
    |||||||||||||| | ||||||||||  |||||||  |||||  ||||||||| ||||  |||||||||||||| |||||| | ||  |||||||||||    
T  20936091 cctattgttgggaaaaaatcttttcggcgccagccatgcccattcgagtgcgacatgtgacgatagatggcatctttggtaacaaattggaattagattt 20936190  T
Q  128 tatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    |||||  ||| ||||||||||||||||||| |||||| | ||||||||||||||||||    
T  20936191 tatcaaatttctacttctatattctcctgtgctagaaaagatgactgtgaagcctgtt 20936248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 185
Target Start/End: Original strand, 20954332 - 20954489
Alignment:
Q  28 cctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagattt 127  Q
    ||||||||||||||||||| ||||||| ||||||||  |||||   |||||||| ||||  ||| |||||||||| |||||  |  |  |||||||||||    
T  20954332 cctattgttgggaagatatattttcggcaccagccatgcccattcaagtgcgacatgtggcgattgatggcatctttggtaccaatttggaattagattt 20954431  T
Q  128 tatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    |||||  ||| ||||||||||||||||  | |||||| | |||||| |||||||||||    
T  20954432 tatcaaatttctacttctatattctcccatgctagaaaagatgactctgaagcctgtt 20954489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 39275231 - 39275390
Alignment:
Q  26 ctcctattgttgggaagatatcttttcgggaccagccacacccatcggagtgcgacttgtgtggatagatggcatctgtggtaaaatatctgaattagat 125  Q
    |||||||||||||||||||| |||||| || |||||||  ||||||  ||| |||| |||| | |||| |||||||  ||| |  | |||||||||||||    
T  39275231 ctcctattgttgggaagataccttttcagggccagccatgcccatccaagttcgacatgtgggcataggtggcatcgctggcatcaaatctgaattagat 39275330  T
Q  126 tttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctgtt 185  Q
    |||||||  ||| | ||  | ||||||||| | |||||| | |||| |||||||||||||    
T  39275331 tttatcaaatttcttctcatgtattctcctatgctagaaaaaatgattgtgaagcctgtt 39275390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 54
Target Start/End: Original strand, 20924479 - 20924507
Alignment:
Q  26 ctcctattgttgggaagatatcttttcgg 54  Q
    |||||||||||||||||||||||||||||    
T  20924479 ctcctattgttgggaagatatcttttcgg 20924507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 20924566 - 20924610
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgt 157  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||    
T  20924566 atctgaattagattttatcagatttctacttctctattcacctgt 20924610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 17971163 - 17971233
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcctg 183  Q
    ||||||||||||||| || || ||| |||||| |||||||||||| ||  || | ||||||||||||||||    
T  17971163 atctgaattagatttcattagatttctacttcaatattctcctgttcttcaaaagatgactgtgaagcctg 17971233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 21238956 - 21239025
Alignment:
Q  113 atctgaattagattttatcaggtttttacttctatattctcctgtcctagaacatatgactgtgaagcct 182  Q
    |||||| |||||||||||||| ||| |||||||  |||||||| |  ||||| | |||||||||||||||    
T  21238956 atctgagttagattttatcagatttctacttctcaattctcctatgttagaaaagatgactgtgaagcct 21239025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 21239067 - 21239135
Alignment:
Q  224 gttcaagagggcctcaggacaagctgaagtgatttatgatgtggaagtctcttcataatgttttttatt 292  Q
    ||||||||| || || ||| |||||||||| |||||  ||||||||| ||||||||||||  |||||||    
T  21239067 gttcaagagtgcatcgggagaagctgaagttatttaccatgtggaagactcttcataatgaattttatt 21239135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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