View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_20 (Length: 422)
Name: NF7311_low_20
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_20 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 30 - 422
Target Start/End: Original strand, 17797648 - 17798040
Alignment:
| Q |
30 |
agagaccttggaggcttacagttgtaaggagcttgcacgaattaagaaaggcgaaggtcgagtgcggaaaacaatgtcttcagatgtgagaagtgttgtt |
129 |
Q |
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| T |
17797648 |
agagaccttggaggcttacagttgtaaggagcttgcacgaattaagaaaggcgaaggtcgagtgcggaaaacaatgtcttcagatgtgagaagtgttgtt |
17797747 |
T |
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| Q |
130 |
gacttcagtttttgtcatctgttagatgaatttctcgccacacttcttccatgtttgcactacgtcacagatttataccttgattacagcagtatcaaaa |
229 |
Q |
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| T |
17797748 |
gacttcagtttttgtcatctgtcagatgaatttcttgccacacttcttccatgtttgcactacgtcacagatttatcccttgattacagcagtatcaaaa |
17797847 |
T |
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| Q |
230 |
tccttccatcctgcatcaatacatgtcaatctttgaagcgacttgctatgaataattgtacggagcttcgagaaataagagggttgccaccaaacataaa |
329 |
Q |
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| T |
17797848 |
tccttccatcctgcatcaatacatgtcaatctttgaagggacttgctatgaataattgtacggagcttcgagaaatcagagggctgccaccaaacataaa |
17797947 |
T |
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| Q |
330 |
acatcttagtttaataaactgtacatcattgacttcccaatccaaagatatgttacaggtatcatatctttaatgtcatcaacaccttttcct |
422 |
Q |
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| T |
17797948 |
acatcttagtgcaataaactgtacatcattgacttcccaatccaaagatatgttacaggtattatatctttaatgtcatcaacaaattttcct |
17798040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 17786498 - 17786902
Alignment:
| Q |
13 |
tttatgttgccaaaactagagaccttggaggcttacagttgtaaggagcttgcacgaattaagaaaggcgaaggtcgagtgcggaaaacaatgtcttcag |
112 |
Q |
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| T |
17786498 |
tttatgttgccaaaactagagaccttggaggcttacagttgtaaggatcttgcacgaattaagaagtgcaaaggtcaagtgcacgaaacaatgtattcag |
17786597 |
T |
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| Q |
113 |
atgtgagaagtgttgttgacttcagtttttgtcatctgttagatgaatttctcgccacacttcttccatgtttgcactacgtcacagatttataccttga |
212 |
Q |
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| T |
17786598 |
gcgcgaaaagtgttgttgacttcaacttttgccatctgtcagatgaatttcttgccacacttcttccatgcttgcactatgtcagaaatttatctcttga |
17786697 |
T |
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| Q |
213 |
ttacagcagtatcaaaatccttccatcctgcatcaatacatgtcaatctttgaagcgacttgctatgaataattgtacggagcttcgagaaataagaggg |
312 |
Q |
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| T |
17786698 |
ttacatcattatcacaatccttccatcatgcatcaatgaatgtcactctttgaaggaacttactttcaataattgtatggagcttcgagaaatcagaggc |
17786797 |
T |
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| Q |
313 |
ttgccaccaaacataaaacatcttagtttaataaactgtacatcattgacttcccaatccaaagatatgtta------caggtatcatatctttaatgtc |
406 |
Q |
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| T |
17786798 |
ctgccaccaaacataaaacatattagtgcaataaattgtacatcattgacttcccaatctaaggatacgttactgaatcaggtatcatatctttaatttc |
17786897 |
T |
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| Q |
407 |
atcaa |
411 |
Q |
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||||| |
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| T |
17786898 |
atcaa |
17786902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 155 - 374
Target Start/End: Original strand, 17803828 - 17804047
Alignment:
| Q |
155 |
atgaatttctcgccacacttcttccatgtttgcactacgtcacagatttataccttgattacagcagtatcaaaatccttccatcctgcatcaatacatg |
254 |
Q |
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| T |
17803828 |
atgaatttcttgccacacttcttcctttcttacactatgtcacaaatatatctcttgattacagcagcattacaatccttccttcaagcatcaacgcgtg |
17803927 |
T |
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| Q |
255 |
tcaatctttgaagcgacttgctatgaataattgtacggagcttcgagaaataagagggttgccaccaaacataaaacatcttagtttaataaactgtaca |
354 |
Q |
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| T |
17803928 |
ttattctttgatgaaacttacgatgaataattgtacggagcttcgagaaatcagaggcctgccaccaaacataaaacatcttggtgcaataaattgtgaa |
17804027 |
T |
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| Q |
355 |
tcattgacttcccaatccaa |
374 |
Q |
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||| |||||||||||||||| |
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| T |
17804028 |
tcactgacttcccaatccaa |
17804047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 13 - 121
Target Start/End: Original strand, 17803662 - 17803770
Alignment:
| Q |
13 |
tttatgttgccaaaactagagaccttggaggcttacagttgtaaggagcttgcacgaattaagaaaggcgaaggtcgagtgcggaaaacaatgtcttcag |
112 |
Q |
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| T |
17803662 |
tttatgttgccaaaacttgagaccttagaggcttactgttgcagggggcttgcgcgaattaagaagagaaaaggtcaagtgccggaaacactgccttcag |
17803761 |
T |
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| Q |
113 |
atgtgagaa |
121 |
Q |
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| T |
17803762 |
atgtgagaa |
17803770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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