View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_low_22 (Length: 396)
Name: NF7311_low_22
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_22 |
 | |
|
| [»] scaffold0048 (5 HSPs) |
| | |
|
| [»] scaffold0185 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0048 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 112 - 375
Target Start/End: Complemental strand, 60136 - 59870
Alignment:
| Q |
112 |
taagagacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgtgctttgagtg---atgagcagcaagtttggattca |
208 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||| |
|
|
| T |
60136 |
taagagacttaccaataaagtttccaacaccatagctttgatcacttttaaaactgtatgtttgttctttgagtggtgatgagcaacaacttttgattca |
60037 |
T |
|
| Q |
209 |
agcatgtcatcaagatcaacaacagggcgaaaacattgagataatttgctctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaa |
308 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
60036 |
agtatgtcatcaagatcaacaacagggcgaaaacattgagataatttgctctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaa |
59937 |
T |
|
| Q |
309 |
gagtttggagttacaaataaggatatttttatgtataacctcaaagctagcaagggaaacaccacat |
375 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
59936 |
gagtttggagttacagatgaggatatttttgcgtataacttcaaagctagcaagggaaacaccacat |
59870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 112 - 378
Target Start/End: Complemental strand, 47526 - 47262
Alignment:
| Q |
112 |
taagagacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgtgctttgagtgatgagcagcaagtttggattcaagc |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| ||| ||| |||||||| |
|
|
| T |
47526 |
taagagacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgttcttggagtggtgagcaacaactttagattcaagt |
47427 |
T |
|
| Q |
212 |
atgtcatcaagatcaacaacagggcgaaaacattgagataatttgctctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaagag |
311 |
Q |
| |
|
|| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
47426 |
atctcatgaagatcaacaacagggcgaaaccattgagataatttgctctttgaaaagttcctcatg--gtgtaactcaagaaaaagaaattcttcaagag |
47329 |
T |
|
| Q |
312 |
tttggagttacaaataaggatatttttatgtataacctcaaagctagcaagggaaacaccacatata |
378 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
47328 |
tttggagttacagatgaggatatttttgcgtataacttcaaagctagcaagggaaacaccacatata |
47262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 112 - 378
Target Start/End: Original strand, 85706 - 85974
Alignment:
| Q |
112 |
taagagacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgtgctttgagtg---atgagcagcaagtttggattca |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||| |
|
|
| T |
85706 |
taagatacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgttctttgagtggtgatgagcaacaactttagattca |
85805 |
T |
|
| Q |
209 |
agcatgtcatcaagatcaacaacagggcgaaaacattgagataatttgctctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaa |
308 |
Q |
| |
|
|| | |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
85806 |
agtaggtcatctagatcaacaacagggcgaaaacattgagagaatttactctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaa |
85905 |
T |
|
| Q |
309 |
gagtttggagttacaaataaggatatttttatgtataacctcaaagctagcaagggaaacaccacatata |
378 |
Q |
| |
|
||||||||||||||| || ||||||||||| ||| |||| || |||||||||||| |||||||||||||| |
|
|
| T |
85906 |
gagtttggagttacagatgaggatatttttgtgtgtaacttc-aagctagcaaggaaaacaccacatata |
85974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 47624 - 47589
Alignment:
| Q |
12 |
tattctgcaagacgaagatattaaaagttaatgatc |
47 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47624 |
tattctgcaagacaaagatattaaaagttaatgatc |
47589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 12 - 47
Target Start/End: Complemental strand, 60232 - 60197
Alignment:
| Q |
12 |
tattctgcaagacgaagatattaaaagttaatgatc |
47 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
60232 |
tattctgcaagacaaagatattaaaagttaatgatc |
60197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0185 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: scaffold0185
Description:
Target: scaffold0185; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 112 - 378
Target Start/End: Complemental strand, 6790 - 6522
Alignment:
| Q |
112 |
taagagacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgtgctttgagtg---atgagcagcaagtttggattca |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | | ||| |||||| |
|
|
| T |
6790 |
taagacacttaccaatatagtttccaacaccatagctttgatcacttttaaaactgtatgtttgttctttgagtggtgatgagcaactactttagattca |
6691 |
T |
|
| Q |
209 |
agcatgtcatcaagatcaacaacagggcgaaaacattgagataatttgctctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaa |
308 |
Q |
| |
|
|| | |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6690 |
agtaggtcatctagatcaacaacagggcgaaaacattgagagaatttactctttgaaaagctcctcatgatgtgtaactcaagaaaaagaaattcttcaa |
6591 |
T |
|
| Q |
309 |
gagtttggagttacaaataaggatatttttatgtataacctcaaagctagcaagggaaacaccacatata |
378 |
Q |
| |
|
||||||||||||||| || ||||||||||| |||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
6590 |
gagtttggagttacagatgaggatatttttgtgtataacttc-aagctagcaagggaaacaccacatata |
6522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University