View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_25 (Length: 359)
Name: NF7311_low_25
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 38448069 - 38447754
Alignment:
| Q |
18 |
gaaacaaatgtataagaggaccaagagata--cttaacaaaaaagatactcttatagaagctctgaaacatatacaggcagtagaatacattaaattgat |
115 |
Q |
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|||||||||||||||||||| ||| | ||| || || |||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
38448069 |
gaaacaaatgtataagaggagcaatatatatactcaagaaaaaatatactcttatagaagctctgaaacatatgctgacagtagaatacattaaattgat |
38447970 |
T |
|
| Q |
116 |
ctatcaaataaggttgtttagacaaaacattcatgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaaga |
215 |
Q |
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| T |
38447969 |
atatcaaataaggttgtttagacaaaacattcgtgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaa-------- |
38447878 |
T |
|
| Q |
216 |
tctggataactcatagtcaaaccaaataaccgtataagtaattctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38447877 |
----gataactcatagtcaaaccaaataaccgtataagtaatcctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttctt |
38447782 |
T |
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| Q |
316 |
ccagttatttatctctgacatctgatgt |
343 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
38447781 |
ccagttatttatctctgacatctgatgt |
38447754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 343
Target Start/End: Original strand, 38550200 - 38550515
Alignment:
| Q |
18 |
gaaacaaatgtataagaggaccaagagata--cttaacaaaaaagatactcttatagaagctctgaaacatatacaggcagtagaatacattaaattgat |
115 |
Q |
| |
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|||||||||||||||||||| ||| | ||| || || |||||| |||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
38550200 |
gaaacaaatgtataagaggagcaatatatatactcaagaaaaaatatactcttatagaagctctgaaacatatgctgacagtagaatacattaaattgat |
38550299 |
T |
|
| Q |
116 |
ctatcaaataaggttgtttagacaaaacattcatgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaaga |
215 |
Q |
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| T |
38550300 |
atatcaaataaggttgtttagacaaaacattcgtgatacattttgtggtagaatgaatgccatgcaggtgtctaatggcatcattgtgtcaa-------- |
38550391 |
T |
|
| Q |
216 |
tctggataactcatagtcaaaccaaataaccgtataagtaattctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttctt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38550392 |
----gataactcatagtcaaaccaaataaccgtataagtaatcctcaaagaaaatgatctggttttcatcaacaccttcctccaaagcaattgccttctt |
38550487 |
T |
|
| Q |
316 |
ccagttatttatctctgacatctgatgt |
343 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
38550488 |
ccagttatttatctctgacatctgatgt |
38550515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 55780639 - 55780778
Alignment:
| Q |
16 |
cagaaacaaatgtataagaggaccaagagatacttaacaaaaaagatactcttatagaagctctgaaacatatacaggcagtagaatacattaaattgat |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
55780639 |
cagaaacaaatgtataagaggaccaagagatacttaacaaaaaagatactcttatagaagctctgaaacatatgctgacagtagaatacattaaattgat |
55780738 |
T |
|
| Q |
116 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
55780739 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
55780778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 55844819 - 55844958
Alignment:
| Q |
16 |
cagaaacaaatgtataagaggaccaagagatacttaacaaaaaagatactcttatagaagctctgaaacatatacaggcagtagaatacattaaattgat |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||| |
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| T |
55844819 |
cagaaacaaatgtataagaggaccaagagatacttaacaaaaaagatactcttatagaagctctgaaacatatgctgacagtagaatacattaaattgat |
55844918 |
T |
|
| Q |
116 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
155 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
55844919 |
ctatcaaataaggttgtttagacaaaacattcatgataca |
55844958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 38448399 - 38448347
Alignment:
| Q |
170 |
gaatgccatgcaggtgtctaatggcatcattgtgtcaaacaaaagatctggat |
222 |
Q |
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|||||||||| |||| ||||||| |||| |||||| |||||||||||||||| |
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| T |
38448399 |
gaatgccatgtaggtttctaatgacatcgttgtgttgaacaaaagatctggat |
38448347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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