View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_27 (Length: 350)
Name: NF7311_low_27
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 1e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 153 - 340
Target Start/End: Original strand, 6361085 - 6361271
Alignment:
| Q |
153 |
atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaacttaagtgtgaatatctgt |
252 |
Q |
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| T |
6361085 |
atctgcttgcaagtgtgctaacattaatattgtgagctagctgcagtgtgctatgatatcattgaagtgtgcaggtgctaact-aagtgtaaatatctgt |
6361183 |
T |
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| Q |
253 |
acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctccatacatgctgttacttggtataacaccaaa |
340 |
Q |
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| T |
6361184 |
acattaattacaaataatatttgttaggattatccaatatatcaagtagaacctctacatacatgttgttacttggtataactccaaa |
6361271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 6360926 - 6361059
Alignment:
| Q |
19 |
catataacaggaacaatatttcaggtttgagcgaattgtattgctaaacatacggttacatatattctgccttccaatactataatcatggagatatctt |
118 |
Q |
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| T |
6360926 |
catataacaggaacaatatttcaggtttgaacgaattgtattgctaaacataaggttacatatattctgccttccaatactataatcatggagatatctt |
6361025 |
T |
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| Q |
119 |
acctactctagctgcaagtgagttggccgtgagt |
152 |
Q |
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| T |
6361026 |
acctactctagctgcaagtgagttggccgtgagt |
6361059 |
T |
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