View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_29 (Length: 338)
Name: NF7311_low_29
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_29 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 17798432 - 17798108
Alignment:
| Q |
14 |
atatcaaggttagctttgaacctcagattcagcagaattatatgatctaaatttctaccaaaagcattcattttagtccacctgacatgaaagaagttct |
113 |
Q |
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| T |
17798432 |
atatcaaggttagctttgaacctcagattcagcagaattatatgatctaaatttctaccaaaagcattcattttagaccacctaacatgaaagaagttct |
17798333 |
T |
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| Q |
114 |
tgagatgtttaccattaatgatcaggtcaaattcatacttaacacaacatttcgaaaaatacaaaccacccgaaactactaccacagtactaagagccat |
213 |
Q |
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| T |
17798332 |
tgagatgtttaccattaatgatcaggtcaaattcatacttaacacaacatttcgaaaaatacaaaccacccgaaactaccaccacagtactaagagccat |
17798233 |
T |
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| Q |
214 |
cggtggcaatttgtttcggaacctgaaggacatagatggttctcttctatattgatggaacagacttgggatagttgattctggaaaacagatatatttg |
313 |
Q |
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| T |
17798232 |
cggtggcaatttgtttcggaacctgaaggacatagatggttctcttttatattgatggaacagacttgggatagttgattctggaaaacagatatatttg |
17798133 |
T |
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| Q |
314 |
gccccagaattgtgaagtttctgtc |
338 |
Q |
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| T |
17798132 |
gccccagaattgtgaagtttctgtc |
17798108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 17787138 - 17786996
Alignment:
| Q |
191 |
actaccacagtactaagagccatcggtggcaatttgtttcggaacctgaaggacatagatggttctcttctatattgatggaac---agacttgggatag |
287 |
Q |
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| T |
17787138 |
actaccaccgtacaaagatctatccgtggaaatttgtttcagaagctgaaggacagatttggttcccttctatattgacggaaccaattacttttgatag |
17787039 |
T |
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| Q |
288 |
ttgattctggaaaacagatatatttggccccagaattgtgaag |
330 |
Q |
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| T |
17787038 |
ttgatcctggaagacagatatatctgggcccagaatggtgaag |
17786996 |
T |
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