View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_3 (Length: 700)

Name: NF7311_low_3
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_3
NF7311_low_3
[»] chr6 (4 HSPs)
chr6 (20-452)||(8394909-8395341)
chr6 (476-685)||(8395536-8395748)
chr6 (149-303)||(8406484-8406633)
chr6 (508-662)||(8406130-8406294)
[»] chr3 (1 HSPs)
chr3 (622-659)||(30292864-30292901)
[»] chr8 (1 HSPs)
chr8 (622-662)||(18079758-18079798)
[»] scaffold1213 (1 HSPs)
scaffold1213 (622-659)||(804-841)
[»] chr5 (2 HSPs)
chr5 (622-659)||(1409413-1409450)
chr5 (623-655)||(2415461-2415493)
[»] chr4 (3 HSPs)
chr4 (623-660)||(3812311-3812348)
chr4 (622-659)||(4937764-4937801)
chr4 (622-659)||(36804574-36804611)
[»] chr2 (2 HSPs)
chr2 (627-659)||(14825629-14825661)
chr2 (623-659)||(19581019-19581055)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 452
Target Start/End: Original strand, 8394909 - 8395341
Alignment:
Q  20 aatatctcaaacataccgcacatgttcatcttgcaaaacgggcattctcggcttcctgagttggacttgttgttgcagtatataattcctatcattgatc 119  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8394909 aatatctcaaacataccgcacatgttcatcttgcaaaacaggcattcttggcttcctgagttggacttgttgttgcagtatataattcctatcattgatc 8395008  T
Q  120 aagtcttggttgatatggttcgccggtgggatatttttcaaggaattgaagcaccgaattcgcttaaatttcagtcaagaacgcggatgcagatggataa 219  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||||| |||||||||    
T  8395009 aagtcttggttgatatggtttgccggtgggatatttttcaaggaattgaagcaccgaattcgcataaatttcagtcgggaacgcggatgcggatggataa 8395108  T
Q  220 atgtggatgcttttatcgttgctagggtttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcactgnnnnnnnnnnnngaac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            ||||    
T  8395109 atgtggatgcttttatcgttgctagggtttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcactgtttttatattttgaac 8395208  T
Q  320 agatatttggagggacgagggtagcaatgaaataagaaacttgtgatcctcgtatatatacttttgtatttatttcatctccttttgttactttttctga 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8395209 agatatttggagggacgagggtagcaatgaaataagaaacttgtgatcctcgtatatatacttttgtatttatttcatctccttttgttactttttctga 8395308  T
Q  420 cgaaaattccttgtactactttgttttcagatt 452  Q
    |||||||||||||||||||||||||||||||||    
T  8395309 cgaaaattccttgtactactttgttttcagatt 8395341  T

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Target: chr6; HSP #2
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 476 - 685
Target Start/End: Original strand, 8395536 - 8395748
Alignment:
Q  476 ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctc--gggtg 573  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  8395536 ctatgttcagaaacaagaaagaaatctactactaatttatctacttctaatttaagaatgttaactctctctcagtctccacttacgaccctcaagggtg 8395635  T
Q  574 atttagtatcaattatatttatccaaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaa-ttttttctttggtaactttgttg 672  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||  |||| ||||    
T  8395636 atttagtatcaattatatttatccaaaatcacgttttattttcttttgtaaataagtgattttcaaatatatttaatttttttctttggcgacttcgttg 8395735  T
Q  673 tatgtgacgttat 685  Q
    |||||||||||||    
T  8395736 tatgtgacgttat 8395748  T

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Target: chr6; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 149 - 303
Target Start/End: Complemental strand, 8406633 - 8406484
Alignment:
Q  149 gatatttttcaaggaattgaagcaccgaattcgcttaaatttcagtcaagaacgcggatgcagatggataaatgtgg-atgcttttatcgttgctagggt 247  Q
    |||| |||||||| ||||||||||  |||||||| |||||||||||   ||||||||||| |||      |||| || ||||||||||  ||||||||||    
T  8406633 gataattttcaagaaattgaagcatggaattcgcataaatttcagttgggaacgcggatggaga------aatgcggtatgcttttatttttgctagggt 8406540  T
Q  248 ttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcactg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406539 ttccggtgagagctgctgagccatgttgaaaatgtgagagaattagggtttcactg 8406484  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 508 - 662
Target Start/End: Complemental strand, 8406294 - 8406130
Alignment:
Q  508 taatttatctacttctaatttaagaatgttaa-ctctctctcagtctccactta-------cgaccctc--gggtgatttagtatcaattatatttatcc 597  Q
    |||||||||||||||||||||||||||||||  |||||||||   |||||||||       ||||| ||  || ||| |||| ||||||||| ||||  |    
T  8406294 taatttatctacttctaatttaagaatgttattctctctctcgacctccacttaagagttacgaccatcaaggttgacttagaatcaattatttttacac 8406195  T
Q  598 aaaatcacgttttatcttcttttgtaaataagtgattttcatatatatttaattttttctttggt 662  Q
    ||||||| ||||| ||||||||| |  | |||||||||| |  |||||||| |||||||||||||    
T  8406194 aaaatcaagttttttcttctttttttcaaaagtgatttttacttatatttagttttttctttggt 8406130  T

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Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 622 - 659
Target Start/End: Original strand, 30292864 - 30292901
Alignment:
Q  622 taaataagtgattttcatatatatttaattttttcttt 659  Q
    |||||||||||||||||||| |||||||||||||||||    
T  30292864 taaataagtgattttcatatttatttaattttttcttt 30292901  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 622 - 662
Target Start/End: Original strand, 18079758 - 18079798
Alignment:
Q  622 taaataagtgattttcatatatatttaattttttctttggt 662  Q
    |||||||||||||||||| ||||||||||||||||| ||||    
T  18079758 taaataagtgattttcatgtatatttaattttttctgtggt 18079798  T

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Target: scaffold1213 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1213
Description:

Target: scaffold1213; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 659
Target Start/End: Original strand, 804 - 841
Alignment:
Q  622 taaataagtgattttcatatatatttaattttttcttt 659  Q
    ||||||||||||||||| || |||||||||||||||||    
T  804 taaataagtgattttcacatttatttaattttttcttt 841  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 659
Target Start/End: Original strand, 1409413 - 1409450
Alignment:
Q  622 taaataagtgattttcatatatatttaattttttcttt 659  Q
    ||||||||||||||||| ||||||| ||||||||||||    
T  1409413 taaataagtgattttcacatatattaaattttttcttt 1409450  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 655
Target Start/End: Original strand, 2415461 - 2415493
Alignment:
Q  623 aaataagtgattttcatatatatttaatttttt 655  Q
    ||||||||||||||||||||||||| |||||||    
T  2415461 aaataagtgattttcatatatatttcatttttt 2415493  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 623 - 660
Target Start/End: Complemental strand, 3812348 - 3812311
Alignment:
Q  623 aaataagtgattttcatatatatttaattttttctttg 660  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  3812348 aaataaatgattttcacatatatttaattttttctttg 3812311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 659
Target Start/End: Original strand, 4937764 - 4937801
Alignment:
Q  622 taaataagtgattttcatatatatttaattttttcttt 659  Q
    ||||||||||||||||||||||||| | ||||||||||    
T  4937764 taaataagtgattttcatatatattaagttttttcttt 4937801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 622 - 659
Target Start/End: Complemental strand, 36804611 - 36804574
Alignment:
Q  622 taaataagtgattttcatatatatttaattttttcttt 659  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  36804611 taaataagtgattttcatatatatttggttttttcttt 36804574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 627 - 659
Target Start/End: Original strand, 14825629 - 14825661
Alignment:
Q  627 aagtgattttcatatatatttaattttttcttt 659  Q
    ||||||||||||||| |||||||||||||||||    
T  14825629 aagtgattttcatatctatttaattttttcttt 14825661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 623 - 659
Target Start/End: Complemental strand, 19581055 - 19581019
Alignment:
Q  623 aaataagtgattttcatatatatttaattttttcttt 659  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  19581055 aaataagtgattttcatatctatttcattttttcttt 19581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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