View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_33 (Length: 330)
Name: NF7311_low_33
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 156; Significance: 7e-83; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 114 - 301
Target Start/End: Original strand, 1693579 - 1693765
Alignment:
| Q |
114 |
ataaagatcggacattatacatgacactaacacacagacacgataataacttaacgaaatgaaagtgattgaatataatcatatgtttcagtgtccgatt |
213 |
Q |
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| T |
1693579 |
ataaagatcagacattata-atgacactaacacacagacacgataataatttaacgaaatgaaagtgattgaatataatcatatgtctcaatgtccgatt |
1693677 |
T |
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| Q |
214 |
ctcacacatgttgaacactgaacacgtcttcaatccgatgtgtcggtgctagtttgagcttagtttttctatccttgtcttgcaaatg |
301 |
Q |
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| T |
1693678 |
ctcacacatgttgaacactgaacacgtcttcaatccgatgtgtcggtggtagtttgagcttagtttttctgtccttgtcttgcaaatg |
1693765 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 19388933 - 19388982
Alignment:
| Q |
159 |
ataacttaacgaaatgaaagtgattgaatataatcatatgtttcagtgtc |
208 |
Q |
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| T |
19388933 |
ataatttaaggaaatgaaagtgattgaatataatcatatttttcggtgtc |
19388982 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Original strand, 5071677 - 5071735
Alignment:
| Q |
149 |
agacacgataataacttaacgaaatgaaagtgattgaatataatcatatgtttcagtgt |
207 |
Q |
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| T |
5071677 |
agacacggtaataacttaagaaaatacaagtgattgaatgtaatcatatgtgtcagtgt |
5071735 |
T |
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