View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_34 (Length: 329)

Name: NF7311_low_34
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_34
NF7311_low_34
[»] chr1 (13 HSPs)
chr1 (52-329)||(9337121-9337408)
chr1 (52-329)||(9363980-9364267)
chr1 (52-329)||(9242777-9243063)
chr1 (54-327)||(9466973-9467256)
chr1 (136-297)||(9299761-9299932)
chr1 (136-291)||(9257783-9257948)
chr1 (1-45)||(9336557-9336601)
chr1 (1-45)||(9363464-9363508)
chr1 (230-327)||(8939148-8939245)
chr1 (1-45)||(9243550-9243594)
chr1 (258-327)||(8926750-8926819)
chr1 (140-216)||(8961975-8962051)
chr1 (263-327)||(8962108-8962172)
[»] scaffold0690 (1 HSPs)
scaffold0690 (56-329)||(1192-1476)
[»] chr6 (1 HSPs)
chr6 (56-329)||(15910630-15910913)
[»] chr3 (1 HSPs)
chr3 (52-315)||(9171080-9171353)


Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 329
Target Start/End: Original strand, 9337121 - 9337408
Alignment:
Q  52 taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat 151  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||| ||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  9337121 taaggatattgaatgtttaatttgtaggtgcaatgattggctcaactgtgcttgttcttgtatttggatttatttttcaaatatatcgctattttaagat 9337220  T
Q  152 gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          |||||||||||||| ||||||||||||    
T  9337221 gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagtgctttaaagccaactaggttctcttatgcagacttaaagagaattacaaat 9337320  T
Q  242 aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc 329  Q
    |||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  9337321 aaatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatcgaaccaaattctagtagccgtgaagattc 9337408  T

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Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 52 - 329
Target Start/End: Original strand, 9363980 - 9364267
Alignment:
Q  52 taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat 151  Q
    |||||||||||||||||| ||||||||||||||| ||||| |||| ||||||  ||||| ||||||| ||||||||||||||||||||||||||||||||    
T  9363980 taaggatattgaatgtttaatttgtaggtgcaatgattggctcaactgtgcttgttcttgtatttggatttatttttcaaatatatcgctattttaagat 9364079  T
Q  152 gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          |||||||||||||| ||||||||||||    
T  9364080 gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttaaagagaattacaaat 9364179  T
Q  242 aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc 329  Q
    |||||||||||||| ||||| ||||| ||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||||    
T  9364180 aaatttaaagataagataggcgaaggggctcatggagctgtttataaaggtaagttatcgaaccaaattctagtagccgtgaagattc 9364267  T

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Target: chr1; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 52 - 329
Target Start/End: Complemental strand, 9243063 - 9242777
Alignment:
Q  52 taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat 151  Q
    ||||||| |||||||||  ||||||||||||||||||||| || | ||||||  ||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  9243063 taaggatgttgaatgtta-atttgtaggtgcaatcattggctctactgtgcttgttcttgtatttggttttatttttaaaatatatcactattttaagat 9242965  T
Q  152 gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat 241  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||||| |||| ||||||||||||    
T  9242964 gaaaagtgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacataaagagaattacaaat 9242865  T
Q  242 aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc 329  Q
    |||||| ||||||| ||||| |||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9242864 aaatttgaagataagataggcgaagggactcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattc 9242777  T

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Target: chr1; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 54 - 327
Target Start/End: Complemental strand, 9467256 - 9466973
Alignment:
Q  54 aggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagatga 153  Q
    |||||||||||||||| ||||||||||| |||||| ||||||| | ||||| | ||| |  | ||    ||| ||| ||| ||||||||||| |||||||    
T  9467256 aggatattgaatgtttaatttgtaggtggaatcatcggttcaactttgctattacttgttctcggcaccattgttcgaatttatcgctatttcaagatga 9467157  T
Q  154 aaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaataa 243  Q
    || |||||||||||  |||||| |||||||||||||||||||| |  ||||||||||||||          ||||| ||| |||| ||||||||||| ||    
T  9467156 aaggcgaagatcatgtaagaatcgaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacataaagagaattacaaacaa 9467057  T
Q  244 atttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat 327  Q
    |||||| ||||| || || ||||||||||||||| ||||||| |||||||||||||| | ||||||||| || ||||| |||||    
T  9467056 atttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaattgtcaagccaaattctcgttgccgttaagat 9466973  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 136 - 297
Target Start/End: Original strand, 9299761 - 9299932
Alignment:
Q  136 atcgctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagactt 225  Q
    ||||| |||| ||||||||| |||||||||||  |||||| |||||||||||||||||||| |  ||||||||||||||          ||||| ||| |    
T  9299761 atcgccatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacat 9299860  T
Q  226 aaaaagaattacaaataaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaatt 297  Q
    ||| ||||||||||| |||||||| ||||| || || ||||||||||||||| ||||||| |||||||||||    
T  9299861 aaagagaattacaaacaaatttaaggataagatcggagaaggagctcatggagctgtttacaaaggtaaatt 9299932  T

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Target: chr1; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 136 - 291
Target Start/End: Complemental strand, 9257948 - 9257783
Alignment:
Q  136 atcgctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaa----------ctatgcagactt 225  Q
    ||||| |||| ||||||||| |||||||||||  |||||| |||||||||||||||||||| |  |||||||||||||          |||||| ||| |    
T  9257948 atcgccatttcaagatgaaaggcgaagatcatgaaagaatcgaaaactttttgaaggattataaggctttaaagccaaccagattctcctatgctgacat 9257849  T
Q  226 aaaaagaattacaaataaatttaaagataaaataggtgaaggagctcatggaactgtttataaagg 291  Q
     || ||||||||||| |||||||| ||||| || || ||||||||||| ||| ||||||| |||||    
T  9257848 caagagaattacaaacaaatttaaggataagatcggagaaggagctcaaggagctgtttacaaagg 9257783  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9336557 - 9336601
Alignment:
Q  1 attaactacacatcgcaagtattagaagcaagtgatcctgaaaat 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9336557 attaactacacatcgcaagtattagaagcaagtgatcctgaaaat 9336601  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9363464 - 9363508
Alignment:
Q  1 attaactacacatcgcaagtattagaagcaagtgatcctgaaaat 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9363464 attaactacacatcgcaagtattagaagcaagtgatcctgaaaat 9363508  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 230 - 327
Target Start/End: Original strand, 8939148 - 8939245
Alignment:
Q  230 agaattacaaataaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat 327  Q
    ||||||||| || |||| ||||| ||  |||| ||||||||||||||| |||| |||||||||||||| ||||  |||||||| || |||||||||||    
T  8939148 agaattacagatcaattcaaagaaaagctaggggaaggagctcatggagctgtctataaaggtaaattatcgagtcaaattcttgttgccgtgaagat 8939245  T

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Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 9243594 - 9243550
Alignment:
Q  1 attaactacacatcgcaagtattagaagcaagtgatcctgaaaat 45  Q
    |||||||||||||||||||||||||||||| ||||||||||||||    
T  9243594 attaactacacatcgcaagtattagaagcacgtgatcctgaaaat 9243550  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 258 - 327
Target Start/End: Original strand, 8926750 - 8926819
Alignment:
Q  258 taggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat 327  Q
    |||| ||||||||||||||| |||| |||||||||||||| ||||| |||||| | || || ||||||||    
T  8926750 taggcgaaggagctcatggagctgtctataaaggtaaattatcgaatcaaattatggttgctgtgaagat 8926819  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 8961975 - 8962051
Alignment:
Q  140 ctattttaagatgaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaacta 216  Q
    ||||| || ||||||| | |||||||| || ||| ||||||||||||||||||||||   ||| | |||||||||||    
T  8961975 ctattataggatgaaaggagaagatcaaactagacttgaaaactttttgaaggattatgaagcgtcaaagccaacta 8962051  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 8962108 - 8962172
Alignment:
Q  263 gaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagat 327  Q
    ||||||||||||||| |||| || ||||||||||| ||||  |||||||| || || ||||||||    
T  8962108 gaaggagctcatggagctgtctacaaaggtaaattatcgagtcaaattcttgttgctgtgaagat 8962172  T

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Target: scaffold0690 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 56 - 329
Target Start/End: Original strand, 1192 - 1476
Alignment:
Q  56 gatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgc-tacttcttctatttggttttatttttcaaatatatcgctattttaagatgaa 154  Q
    |||||||||||||| ||||||||||| ||||||||| |||| | ||| |  |||||||||||||||  ||||||||||||||| | ||| |||| |||||    
T  1192 gatattgaatgtttaatttgtaggtgtaatcattggctcaactctgccttgttcttctatttggttccatttttcaaatatatagatatgttaaaatgaa 1291  T
Q  155 aagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaataaa 244  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||||||| || |||||||||||||||    
T  1292 aggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagaattacaaataaa 1391  T
Q  245 tttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc 329  Q
    ||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1392 tttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattc 1476  T

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Target: chr6 (Bit Score: 153; Significance: 5e-81; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 56 - 329
Target Start/End: Complemental strand, 15910913 - 15910630
Alignment:
Q  56 gatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagatgaaa 155  Q
    |||||||||||||| ||||||||||| ||||||||| |||| | | ||  |||||||||||||||  ||||||||||||||| | ||| |||| ||||||    
T  15910913 gatattgaatgtttaatttgtaggtgtaatcattggctcaacttttcttgttcttctatttggttccatttttcaaatatatagatatgttaaaatgaaa 15910814  T
Q  156 agcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaataaat 245  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||          ||||||||||| || ||| ||||||||||||    
T  15910813 ggcgaagatcatacaagaattgaaaactttttgaaggattacagggctttaaagccaactaggttctcttatgcagacttgaagagatttacaaataaat 15910714  T
Q  246 ttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagtagccgtgaagattc 329  Q
    |||||||||| ||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15910713 ttaaagataagataggggaaggggctcatggagctgtttataaaggtaaattatcgaaccaaattctagtagccgtgaagattc 15910630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 315
Target Start/End: Original strand, 9171080 - 9171353
Alignment:
Q  52 taaggatattgaatgtttgatttgtaggtgcaatcattggttcaattgtgctacttcttctatttggttttatttttcaaatatatcgctattttaagat 151  Q
    |||||||||||||||||  ||||| ||||| ||| |||||||||| | ||||| | ||| |  | |||  |||| ||||| |  |||   |||| |||||    
T  9171080 taaggatattgaatgttaaatttgcaggtgtaataattggttcaactttgctagtgcttgtgctcggtgctattgttcaagtccatcatcatttcaagat 9171179  T
Q  152 gaaaagcgaagatcatacaagaattgaaaactttttgaaggattacagagctttaaagccaac----------tatgcagacttaaaaagaattacaaat 241  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||  ||||||||||||||          ||||| ||| |||| ||||| ||||||    
T  9171180 gaaaggcgaagatcataaaagaatcgaaaactttttgaaggattacaaggctttaaagccaaccagattctcctatgctgacataaagagaatcacaaat 9171279  T
Q  242 aaatttaaagataaaataggtgaaggagctcatggaactgtttataaaggtaaattgtcgaaccaaattctagt 315  Q
    |||||||| |||||  |||| ||||||||||||||| ||||||| ||||||||||| || | ||||||||||||    
T  9171280 aaatttaaggataagttaggcgaaggagctcatggagctgtttacaaaggtaaattatcaagccaaattctagt 9171353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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