View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_36 (Length: 319)
Name: NF7311_low_36
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 1738826 - 1738616
Alignment:
| Q |
16 |
atattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggcaat |
115 |
Q |
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| T |
1738826 |
atattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgccaat |
1738727 |
T |
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| Q |
116 |
gttagttggtctatatatttcatgaaacactcattcattgatatatatatacacacacactacttatgcataataattaaactacagtaatagttaacat |
215 |
Q |
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| T |
1738726 |
gttagttggtctatatatttcatgaaacactcattcattgatata--tatacacacacactacttatgcataataattaaactacagtaatagtttactt |
1738629 |
T |
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| Q |
216 |
tattgatagtttt |
228 |
Q |
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| T |
1738628 |
tattgatagtttt |
1738616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 1717329 - 1717232
Alignment:
| Q |
16 |
atattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggcaat |
115 |
Q |
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||||||||| |||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
1717329 |
atattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--taccaaatccttgccaat |
1717232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 1738591 - 1738546
Alignment:
| Q |
259 |
tgaggatatctaaatgattttacttttctattttggtaggggaatg |
304 |
Q |
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| T |
1738591 |
tgaggatatctaaatgattttacttttctattttggtaggggaatg |
1738546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 1717185 - 1717140
Alignment:
| Q |
259 |
tgaggatatctaaatgattttacttttctattttggtaggggaatg |
304 |
Q |
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| T |
1717185 |
tgaggatatctaaatgtttttacttttctatttgggtaggggaatg |
1717140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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