View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_38 (Length: 295)
Name: NF7311_low_38
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_38 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 3455291 - 3455013
Alignment:
| Q |
1 |
aaatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttcttt |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455291 |
aaatccagtttactagaaaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttcttt |
3455192 |
T |
|
| Q |
101 |
ctactagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455191 |
ctactagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaaaaacaaaaatgaaatcaaattgggtaaacgtgaaattgaata |
3455092 |
T |
|
| Q |
201 |
caaggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaag |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455091 |
caaggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaag |
3455013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 8523415 - 8523145
Alignment:
| Q |
1 |
aaatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttcttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8523415 |
aaatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttcttt |
8523316 |
T |
|
| Q |
101 |
ctactagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaata |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8523315 |
ctactagtacgaaccataattgcag--------aagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaata |
8523224 |
T |
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| Q |
201 |
caaggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaag |
279 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8523223 |
caaggatcccaaataaaaatttaaagatcccaaatcagaaatactaggaattccaaaatttggcaacaaaagaatgaag |
8523145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 2 - 279
Target Start/End: Original strand, 1009609 - 1009878
Alignment:
| Q |
2 |
aatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttctttc |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1009609 |
aatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaataagaatagaatgaagaaggattgaattcaaagaacccttccttc |
1009708 |
T |
|
| Q |
102 |
tactagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaatac |
201 |
Q |
| |
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|||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1009709 |
tactagcacgaaccataattgcag--------aagctttttattatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaatac |
1009800 |
T |
|
| Q |
202 |
aaggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaag |
279 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
1009801 |
aaggatcccaaataaaaatttaaagatcccaaatcagaaatactagaaattccaaaatttggcaacaaaagaatgaag |
1009878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 42878499 - 42878229
Alignment:
| Q |
1 |
aaatccagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaaggcaaacaagaatagaatgaagaaggattgaattcaaagaacccttcttt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
42878499 |
aaattcagtttactagagaaacaaccgtaaagtaaaattgcagcaaacaatgcaaacaaaaatagaatgaagaaggattgaattcaaaaaacccttcttt |
42878400 |
T |
|
| Q |
101 |
ctactagtacgaaccataattgcagcaaacatgaagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaata |
200 |
Q |
| |
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||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42878399 |
ctactagtaggaaccataattgcag--------aagctttttagtatttcaacaacaacaacaaaaatgaaatcaaattgggtaaacgtgaaattgaata |
42878308 |
T |
|
| Q |
201 |
caaggatcccaaataaaaatttaaaggtcccaaatcagaaatactaggaattcgaaaatttggcaacaaaagaatgaag |
279 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42878307 |
caaggatcccaaataaaaatttaaagatcccaaatcagaaatactaggaattccaaaatttggcaacaaaagaatgaag |
42878229 |
T |
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