View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_4 (Length: 693)
Name: NF7311_low_4
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 484
Target Start/End: Original strand, 33881941 - 33882404
Alignment:
| Q |
20 |
cattgaacttccttagatcaaaagtttttgacttttaattttgagtttctttggttttattgttcttagcaggtcatcactatggttgatgctgttgttg |
119 |
Q |
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| T |
33881941 |
cattgaacttccttagatcaaa-gcttttgacttttaattttgagtttctttggttttattgttcttagcaggtcatcactatggttgatgctgttgttg |
33882039 |
T |
|
| Q |
120 |
gtatagtaattgaggaactattgaattcagttattaaaatgaaagacagagctgagaagttcaaaccaactctagaacgcttaaaagaaactctcgaatc |
219 |
Q |
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| T |
33882040 |
gtatagtaattgaggaactattgaattcagttattgaaatgaaagacagagctgtgaagttcaaaccaactctagaacgcttagaagaaactctcgaatc |
33882139 |
T |
|
| Q |
220 |
attagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacctaatgaaacgaagagaataatcaaacaaatgaaagatggaaaa |
319 |
Q |
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| T |
33882140 |
attagcaccattgatcaatcaaatagatgaactcaacaagaagttgaaccgatcacctaatgaaacaaagagaataatcaaacaaatgaaagatggaaaa |
33882239 |
T |
|
| Q |
320 |
gaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaacagcttgaatcattggatgaag |
419 |
Q |
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| T |
33882240 |
gaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttggtacaaaaaagcacagtatcaagaagaacttgaagcattggatgaaa |
33882339 |
T |
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| Q |
420 |
agattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattggaaacacat |
484 |
Q |
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| T |
33882340 |
agattaaaagattctttgatcttgatttgatagctcaaattgcaaggactggattggaaacacat |
33882404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 683
Target Start/End: Original strand, 33866120 - 33866781
Alignment:
| Q |
20 |
cattgaacttccttagatcaaaagttttt-gacttttaattttgagtttctttggttttattgttcttagcaggtcatcactatggtt---gatgctgtt |
115 |
Q |
| |
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|||||| |||||||||||||||| ||||| | || ||||||||| || |||| ||| |||||||| | || |||| |||||||| ||||||||| |
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| T |
33866120 |
cattgaccttccttagatcaaaatttttttgtctattaattttg---ttttttgttttatttgttcttggtagatcatggctatggttctagatgctgtt |
33866216 |
T |
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| Q |
116 |
gttggtatagtaattgaggaactattgaattcagttattaaaatgaaagacagagctgagaagttcaaaccaactctagaacgcttaaaagaaactctcg |
215 |
Q |
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| T |
33866217 |
gttgggaaattagttgaagaactaatgagttcagttgttgacatgaagaacaaagctttgaagttcaaaccaactctagatagattagaagctacacttc |
33866316 |
T |
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| Q |
216 |
aatcattagcaccattgatcaatcaaatagatgaactcaacaagaagttggaccgatcacctaatgaaacgaagagaataatcaaacaaatgaaagatgg |
315 |
Q |
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| T |
33866317 |
aatcattaggaccattgatcaatcaaatagatgaactcaagaagaaattggatcattcacccaatgaaacaaaaacactgatcaaacaaatgaaagatgg |
33866416 |
T |
|
| Q |
316 |
aaaagaacttgttcttaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaacagcttgaatcattggat |
415 |
Q |
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| T |
33866417 |
aaaagaacttgttctaaaatgttctaatgaagacaaaatccagtggtggaattgttgttacaaaaaagcacagtatcaagaacaacttgaagcattggat |
33866516 |
T |
|
| Q |
416 |
gaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgattggattggaaacacatttggagattaaagagtttcgtgctgaaattc |
515 |
Q |
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| T |
33866517 |
gaagagattaaaagattctttggtcttgatatgatagctcaaggtgcagtgactggattggaaacacttttggagattaaagagtttcgtgctgaattta |
33866616 |
T |
|
| Q |
516 |
g-aag--tattcttgtgaggaatgaaaggattgaatt-agagaatatttgtcggcctcctgaaccacctggttttattgttgggttggatgagactttca |
611 |
Q |
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| T |
33866617 |
gtaaggctaatgttgggagaagtgaaagagttgaattaagag-gtgtttgtttgccacctcaaccacctggttttattgttgggttggatggtcctttga |
33866715 |
T |
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| Q |
612 |
ataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctgttgttactgtcacaggttctg |
683 |
Q |
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| T |
33866716 |
atgagttgaagatgagattgtt------gaaggatgaggttagtgtttctgttgttactgttactggttctg |
33866781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 138; E-Value: 9e-72
Query Start/End: Original strand, 505 - 683
Target Start/End: Original strand, 33882446 - 33882630
Alignment:
| Q |
505 |
tgctgaaattcgaagtattcttgtgaggaatgaaaggattga------attagagaatatttgtcggcctcctgaaccacctggttttattgttgggttg |
598 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
33882446 |
tgctgaaattcgaagtgttcttgtgaggactgaaaggattgaatttgaattagagaatatttgtcggcctcctaaaccacctggttttattgttgggtcg |
33882545 |
T |
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| Q |
599 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctgttgttactgtcacaggttctg |
683 |
Q |
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| T |
33882546 |
gatgagactttcaataagttgaaggagatattgttgagtaagaagaatgagcttagtgtctctgttgttactgttactggttctg |
33882630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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