View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_42 (Length: 280)
Name: NF7311_low_42
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_42 |
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Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 270
Target Start/End: Original strand, 44566040 - 44566273
Alignment:
| Q |
18 |
tatacaattttcctttcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttg |
117 |
Q |
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| T |
44566040 |
tatacaattttcctttcaccatgatatgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttg |
44566139 |
T |
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| Q |
118 |
tatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtt |
217 |
Q |
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| T |
44566140 |
tatcctcaaccattgctgcagttggac-------------------ttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtt |
44566220 |
T |
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| Q |
218 |
tattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatg |
270 |
Q |
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| T |
44566221 |
tattgttttttgtcttgtaagtttgttgaattcagattcctactttgtctatg |
44566273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 33 - 270
Target Start/End: Complemental strand, 36033142 - 36032910
Alignment:
| Q |
33 |
tcaccatgatttgatcactttagtgtctgtaataaaagtaatatgtttgacatctcaattttcaggtttatcaatcccgtggttgtatcctcaaccattg |
132 |
Q |
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| T |
36033142 |
tcaccataatttgatcactgttgggtttgaaatcaaagtaatatgttttgcatctcaattttcaggtttatcaatcctgtggttgtatccccaaccattg |
36033043 |
T |
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| Q |
133 |
ctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgagatcggtgcagtacagatattagtgtttattgttttttgtct |
232 |
Q |
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| T |
36033042 |
ctgcagttggactttcattttatggttatggttttcctcttgttggcacatgtattgagattggtgcaatacaaatattagtggttattgttttttccct |
36032943 |
T |
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| Q |
233 |
tgtaagtttgttgaattcagattcctactttgtctatg |
270 |
Q |
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| T |
36032942 |
tgtaag-----tgaattcagactcccactttgtctatg |
36032910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 92 - 241
Target Start/End: Original strand, 20121896 - 20122045
Alignment:
| Q |
92 |
tttcaggtttatcaatcccgtggttgtatcctcaaccattgctgcagttggactttcattctatagctatggttttcctctagttggcacgtgtcttgag |
191 |
Q |
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| T |
20121896 |
tttcagggtgatcaatcctgtagttgtatccccaactattgctgcagttggactttcatttttcagttacggattcccattagtgggtacatgtcttgag |
20121995 |
T |
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| Q |
192 |
atcggtgcagtacagatattagtgtttattgttttttgtcttgtaagttt |
241 |
Q |
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| T |
20121996 |
attggtgcagtacagatattagtggttattgttttctctcttggaagttt |
20122045 |
T |
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