View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_60 (Length: 240)
Name: NF7311_low_60
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_60 |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 6 - 223
Target Start/End: Complemental strand, 33965880 - 33965663
Alignment:
| Q |
6 |
ttttgtgtttagggagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacact |
105 |
Q |
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| T |
33965880 |
ttttgtgtctagggagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacact |
33965781 |
T |
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| Q |
106 |
gctgcaacacctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttcattgctaagaacatcacattca |
205 |
Q |
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| T |
33965780 |
gctgcaacacctggtccaagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttcattgccaagaacatcacattca |
33965681 |
T |
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| Q |
206 |
aagtatgtaaccaaaaaa |
223 |
Q |
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|||||||||||| ||||| |
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| T |
33965680 |
aagtatgtaacccaaaaa |
33965663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 43077255 - 43077458
Alignment:
| Q |
19 |
gagaaagttaacattcctcctttaaaatccttcataaccatagaaggagatggtgcagatacaacaattgttcaatggggtgacactgctgcaacacctg |
118 |
Q |
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|||||||||| ||||||| | |||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||| ||| ||| |
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| T |
43077255 |
gagaaagttagcattcctgcattaaaatcattcataaccatacaaggagcaggtgcagataaaacaattgttcaatggggtgacactgctctaactccta |
43077354 |
T |
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| Q |
119 |
gtcc------aagagggaatccattgggaacatatggttcagcaacttttgcagttaattcaccttatttcattgctaagaacatcacattcaaagtatg |
212 |
Q |
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| T |
43077355 |
atcctggagcaaaaggacagacactaggaacttatggttcggcaacttttgcagtgaattcaccttatttcattgctaagaacatcacattcaaagtaag |
43077454 |
T |
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| Q |
213 |
taac |
216 |
Q |
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|||| |
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| T |
43077455 |
taac |
43077458 |
T |
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