View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_65 (Length: 236)
Name: NF7311_low_65
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_65 |
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Alignment Details
Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 33966051 - 33966286
Alignment:
| Q |
1 |
ttataaatgtttaaatactatcgttcagtttacaagattatccctgaatcataccattgaggactccacgccaataagggtacnnnnnnnnnnta--act |
98 |
Q |
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| T |
33966051 |
ttataagtgttttaatactatagtttagtttacaagattatccctgaatcgtaccattgaggactccgcaccaataagggtacaaaaaaaaaaaacaact |
33966150 |
T |
|
| Q |
99 |
aaatctttagtcaaagactaataatctgagaattctgatgatagaaactcacaaggaaaaaacacaagaagaaac-aaagttgtctgtgtaatctctttc |
197 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33966151 |
aaatctttagtcaaagactaataatctgagaattctaatgatagaaactcataaggaaaaaacacaagaagaaacaaaagttgtctgtgtaatctctttc |
33966250 |
T |
|
| Q |
198 |
caacaacattttatgtgtaaactaaaaaacataaca |
233 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |
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| T |
33966251 |
caacaacattgtatgtgtaaactaaaaaacataaca |
33966286 |
T |
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