View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_7 (Length: 598)

Name: NF7311_low_7
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_7
NF7311_low_7
[»] chr1 (13 HSPs)
chr1 (20-328)||(9114637-9114949)
chr1 (18-187)||(9163773-9163942)
chr1 (18-175)||(9157670-9157827)
chr1 (199-324)||(14903803-14903932)
chr1 (18-171)||(9202660-9202813)
chr1 (18-171)||(9175631-9175784)
chr1 (202-326)||(14904539-14904667)
chr1 (223-328)||(9116003-9116108)
chr1 (57-180)||(9220130-9220253)
chr1 (202-313)||(17690892-17691007)
chr1 (508-558)||(9115117-9115167)
chr1 (204-313)||(17689738-17689850)
chr1 (223-310)||(37499396-37499483)
[»] chr2 (14 HSPs)
chr2 (223-328)||(4734158-4734263)
chr2 (200-328)||(4733302-4733434)
chr2 (202-313)||(14159206-14159321)
chr2 (202-312)||(38695110-38695224)
chr2 (202-313)||(14160377-14160492)
chr2 (202-310)||(4410599-4410711)
chr2 (200-284)||(18166631-18166719)
chr2 (192-312)||(42962758-42962882)
chr2 (226-312)||(4409188-4409274)
chr2 (223-282)||(38694913-38694972)
chr2 (223-282)||(42963020-42963079)
chr2 (226-279)||(18171335-18171388)
chr2 (241-328)||(34128256-34128343)
chr2 (519-561)||(4733638-4733680)
[»] chr5 (14 HSPs)
chr5 (223-328)||(9379955-9380060)
chr5 (223-328)||(9380659-9380764)
chr5 (223-328)||(1501037-1501142)
chr5 (202-312)||(23322320-23322434)
chr5 (202-318)||(5841093-5841213)
chr5 (196-311)||(34634062-34634181)
chr5 (223-312)||(25088429-25088518)
chr5 (223-312)||(25146398-25146487)
chr5 (199-282)||(43183227-43183314)
chr5 (202-284)||(42792948-42793034)
chr5 (223-282)||(23322123-23322182)
chr5 (223-282)||(5840902-5840961)
chr5 (201-264)||(20244521-20244588)
chr5 (226-282)||(15933384-15933440)
[»] chr8 (9 HSPs)
chr8 (203-324)||(32539395-32539520)
chr8 (202-326)||(10536000-10536128)
chr8 (202-324)||(10536737-10536863)
chr8 (223-282)||(30905978-30906037)
chr8 (196-284)||(18203306-18203398)
chr8 (223-264)||(32538284-32538325)
chr8 (203-284)||(30905397-30905482)
chr8 (248-312)||(5425483-5425546)
chr8 (223-275)||(18202798-18202850)
[»] chr7 (8 HSPs)
chr7 (223-328)||(18471712-18471817)
chr7 (202-326)||(18470139-18470267)
chr7 (223-328)||(8328220-8328325)
chr7 (202-312)||(4265198-4265312)
chr7 (225-321)||(8594089-8594185)
chr7 (201-312)||(8905639-8905753)
chr7 (203-277)||(8329038-8329115)
chr7 (223-268)||(25749396-25749441)
[»] chr4 (29 HSPs)
chr4 (202-324)||(28450750-28450876)
chr4 (202-326)||(28451484-28451612)
chr4 (202-313)||(9450879-9450994)
chr4 (199-312)||(9268020-9268137)
chr4 (204-310)||(12585382-12585492)
chr4 (199-312)||(3990897-3991014)
chr4 (201-310)||(49028487-49028600)
chr4 (223-312)||(52677577-52677666)
chr4 (202-313)||(9449715-9449830)
chr4 (201-312)||(10468702-10468817)
chr4 (226-311)||(4437708-4437793)
chr4 (199-312)||(622056-622171)
chr4 (203-312)||(45667232-45667345)
chr4 (202-282)||(10286410-10286494)
chr4 (223-284)||(4439023-4439084)
chr4 (223-311)||(17931313-17931401)
chr4 (223-282)||(49028288-49028347)
chr4 (226-280)||(16067578-16067632)
chr4 (205-284)||(25225793-25225876)
chr4 (223-312)||(16067349-16067438)
chr4 (206-310)||(21038119-21038226)
chr4 (226-289)||(10202706-10202769)
chr4 (200-284)||(17932125-17932213)
chr4 (225-282)||(52677804-52677861)
chr4 (223-282)||(10468505-10468564)
chr4 (223-282)||(12585183-12585242)
chr4 (223-282)||(36098770-36098829)
chr4 (199-258)||(12315852-12315915)
chr4 (226-275)||(21325689-21325738)
[»] chr3 (23 HSPs)
chr3 (202-312)||(27864799-27864913)
chr3 (202-310)||(46684098-46684210)
chr3 (202-309)||(16907930-16908041)
chr3 (202-312)||(24107151-24107265)
chr3 (202-280)||(31596740-31596823)
chr3 (200-310)||(38758832-38758945)
chr3 (223-284)||(27865048-27865109)
chr3 (223-282)||(3171514-3171573)
chr3 (223-282)||(38758633-38758692)
chr3 (223-282)||(54446045-54446104)
chr3 (223-284)||(19860516-19860577)
chr3 (223-280)||(24107405-24107462)
chr3 (223-282)||(18026103-18026162)
chr3 (226-281)||(21792245-21792300)
chr3 (223-312)||(14812452-14812541)
chr3 (223-312)||(19860712-19860800)
chr3 (223-307)||(21792343-21792428)
chr3 (202-311)||(46685488-46685601)
chr3 (259-326)||(24360459-24360526)
chr3 (205-312)||(54446237-54446349)
chr3 (200-259)||(18025878-18025941)
chr3 (202-312)||(3171711-3171822)
chr3 (200-246)||(11422377-11422427)
[»] chr6 (6 HSPs)
chr6 (202-312)||(5367637-5367750)
chr6 (202-312)||(3659174-3659287)
chr6 (202-289)||(8286788-8286879)
chr6 (237-312)||(3720090-3720165)
chr6 (223-282)||(3658977-3659036)
chr6 (223-277)||(28944270-28944324)
[»] scaffold0069 (2 HSPs)
scaffold0069 (204-312)||(19897-20009)
scaffold0069 (223-282)||(20151-20210)
[»] scaffold0006 (2 HSPs)
scaffold0006 (203-310)||(93633-93743)
scaffold0006 (226-275)||(93890-93939)
[»] scaffold0008 (2 HSPs)
scaffold0008 (205-310)||(266844-266953)
scaffold0008 (223-282)||(266646-266705)


Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 9114637 - 9114949
Alignment:
Q  20 aagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgcaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9114637 aagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgcaaa 9114736  T
Q  120 tgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggtattttaattcattctctacacatagttatttggcttaattaatgatttt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9114737 tgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggtattttaattcattctctacacatagttatttggcttaattaatgatttt 9114836  T
Q  220 gtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttc 315  Q
    |||    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  9114837 gtcccttaagttatttgttggttacattttggtcccataagttattaacgttacgttttggtcccttaatttataattcgttagccaaataaatcctttc 9114936  T
Q  316 tgttaaattttgt 328  Q
    | |||||||||||    
T  9114937 tattaaattttgt 9114949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 18 - 187
Target Start/End: Complemental strand, 9163942 - 9163773
Alignment:
Q  18 ggaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| ||||| |    
T  9163942 ggaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgattgtgatgatgaagacattggttttggttatcgatgta 9163843  T
Q  118 aatgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggtattttaattcattctct 187  Q
    |||||||||| |||| ||||||| |||| |||| |||||| || |||| ||||| |||||||| ||||||    
T  9163842 aatgtaaggaaggttatgaaggagacccatatcatccagaaggatgcataggtaatttaattctttctct 9163773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 9157827 - 9157670
Alignment:
Q  18 ggaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgca 117  Q
    |||||| || ||||||| |||||||||  | |||||| ||||||||||| ||| ||||||| |||||| ||| | ||||||||||||||||||||||| |    
T  9157827 ggaagtaaatattgtaatgcttcaaagaatgaagatgattatgcttgcaagaaaaatagtgattgtgatgataaggacattgattttggttaccgatgta 9157728  T
Q  118 aatgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggtatttt 175  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||| |||||||||    
T  9157727 aatgtaaggaaggttatgaaggaaacccgtatcatccagatggctgcataggtatttt 9157670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 199 - 324
Target Start/End: Original strand, 14903803 - 14903932
Alignment:
Q  199 tttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattc 294  Q
    |||||||||||||||||||| |||    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| | |    
T  14903803 tttggcttaattaatgatttggtcccttaagttatttgttggttacattttgatcccataagttattaacgttacgttttggtcccctaacttatagtcc 14903902  T
Q  295 gttagccaaataaatcctttctgttaaatt 324  Q
    ||||| |||||||||| |||| ||||||||    
T  14903903 gttagtcaaataaatcatttccgttaaatt 14903932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 9202813 - 9202660
Alignment:
Q  18 ggaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgca 117  Q
    |||||| || ||||||| |||||||||  | |||||||||||||||||| ||| ||||||| |||| | ||||||||||||||||||||||| ||||| |    
T  9202813 ggaagtaaacattgtaatgcttcaaagattgaagatggttatgcttgcaagaataatagtgattgttatgatgaagacattgattttggttatcgatgta 9202714  T
Q  118 aatgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggta 171  Q
    |||||||||| |||| || |||||| ||||||| |||||||||||||| |||||    
T  9202713 aatgtaaggacggttatggaggaaatccgtatcatccagatggctgcacaggta 9202660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 9175784 - 9175631
Alignment:
Q  18 ggaagtgaaaattgtaaggcttcaaagggtaaagatggttatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgca 117  Q
    |||||| || ||||||| |||||||||  | |||||| ||||||||||| ||| ||||||| |||| | ||| | ||||||||||||||||||||||| |    
T  9175784 ggaagtaaatattgtaatgcttcaaagaatgaagatgattatgcttgcaggaataatagtgattgttatgataaggacattgattttggttaccgatgta 9175685  T
Q  118 aatgtaaggatggttttgaaggaaacccgtatcttccagatggctgcaaaggta 171  Q
    |||||||| |||||| ||||||||| ||||||| |||||||||||||| |||||    
T  9175684 aatgtaagcatggttatgaaggaaatccgtatcatccagatggctgcacaggta 9175631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 14904667 - 14904539
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||| ||||  |||    
T  14904667 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatctgtt 14904568  T
Q  298 agccaaataaatcctttctgttaaatttt 326  Q
    || |||||||||| |||||||||||||||    
T  14904567 agtcaaataaatcatttctgttaaatttt 14904539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 9116108 - 9116003
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    |||||||||||||||||||||||| || ||||||||||||||||| | |||||||| ||||||||||||| ||||||| ||||||||| |||| ||||||    
T  9116108 aagttatttgttggttacattttggtctcataagttattaacgtttcgttttggtctcttaacttataatccgttagctaaataaatcatttccgttaaa 9116009  T
Q  323 ttttgt 328  Q
    ||||||    
T  9116008 ttttgt 9116003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 9220253 - 9220130
Alignment:
Q  57 tatgcttgcatgaagaatagtgtttgtgacgatgaagacattgattttggttaccgatgcaaatgtaaggatggttttgaaggaaacccgtatcttccag 156  Q
    |||||||||| ||||||||||| |||    ||||  ||||||||||||||||||| ||| ||||| ||||| |||| ||||||||||||||||| |||||    
T  9220253 tatgcttgcaagaagaatagtgattgcattgatgtggacattgattttggttaccaatgtaaatgcaaggaaggttatgaaggaaacccgtatcatccag 9220154  T
Q  157 atggctgcaaaggtattttaattc 180  Q
    ||||||||| ||||| ||||||||    
T  9220153 atggctgcataggtaatttaattc 9220130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 17691007 - 17690892
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||  || || |||||||||||||||||||||| |||||||||||||||||||| |   ||    
T  17691007 ggcttaattaatgatttggtcccttaagttatttgttggttatgttctggtcccataagttattaacgttacgttttggtcccttaacttatattctatt 17690908  T
Q  298 agccaaataaatcctt 313  Q
    ||||||||||||||||    
T  17690907 agccaaataaatcctt 17690892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 508 - 558
Target Start/End: Original strand, 9115117 - 9115167
Alignment:
Q  508 tatcatgaatgtttgaaattgttgaatgttgaaattcctcttagagggtga 558  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9115117 tatcatgaatgtttgaaattgttgaatgttgaaattcctcttagagggtga 9115167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 204 - 313
Target Start/End: Original strand, 17689738 - 17689850
Alignment:
Q  204 cttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttag 299  Q
    ||||||||||||||| |||    ||||||||||||| |||| ||| | || |||||||||| ||||||||||||| ||||||||||||||| | ||||||    
T  17689738 cttaattaatgatttggtcccttaagttatttgttgattacgtttgg-tctcataagttataaacgttacattttagtcccttaacttatattccgttag 17689836  T
Q  300 ccaaataaatcctt 313  Q
    | ||||||||||||    
T  17689837 ctaaataaatcctt 17689850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 310
Target Start/End: Complemental strand, 37499483 - 37499396
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatc 310  Q
    |||||||||||||||||||||||| || ||||||||||||| |||| | ||| ||| ||||| |||  ||  ||||||||||||||||    
T  37499483 aagttatttgttggttacattttggtctcataagttattaatgttataatttcgtctcttaagttagtatctgttagccaaataaatc 37499396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 8e-41; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 4734263 - 4734158
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  4734263 aagttatttgttggttacattttgatcctataagttattaacgttacgttttggtcccttaacttataatctgttagccaaataaatcctttccgttaaa 4734164  T
Q  323 ttttgt 328  Q
    ||||||    
T  4734163 ttttgt 4734158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 200 - 328
Target Start/End: Original strand, 4733302 - 4733434
Alignment:
Q  200 ttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcg 295  Q
    |||||||||||||||||||  ||    || ||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||| ||||||| ||    
T  4733302 ttggcttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataagttattaacattacgttttggtcccttaatttataatccg 4733401  T
Q  296 ttagccaaataaatcctttctgttaaattttgt 328  Q
    ||||||||||||||||||| |||||||||||||    
T  4733402 ttagccaaataaatcctttatgttaaattttgt 4733434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 14159206 - 14159321
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||| |  |||    
T  14159206 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctgtt 14159305  T
Q  298 agccaaataaatcctt 313  Q
    ||||||||||||||||    
T  14159306 agccaaataaatcctt 14159321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 38695224 - 38695110
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    ||||||||| |||||||||||||| |||||||| |||||||||||||| ||||||||||||| |||  ||| |||    
T  38695224 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaacgttacaatttggtcccttaagttagtatttgtt 38695125  T
Q  298 agccaaataaatcct 312  Q
    |||||||||||||||    
T  38695124 agccaaataaatcct 38695110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 14160492 - 14160377
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||| ||| ||| |  |||    
T  14160492 ggcttaattaatgatttggtccattaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttgactcatactctgtt 14160393  T
Q  298 agccaaataaatcctt 313  Q
    |||||| |||||||||    
T  14160392 agccaagtaaatcctt 14160377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 310
Target Start/End: Complemental strand, 4410711 - 4410599
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    ||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||| ||| | |  |||    
T  4410711 ggcttaattaatgatttggtcccttaagttatttgttggttacaatttggtcccgtaagttattaacgctacattttggtcccttaagttagactctgtt 4410612  T
Q  298 agccaaataaatc 310  Q
    |||||||||||||    
T  4410611 agccaaataaatc 4410599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 200 - 284
Target Start/End: Original strand, 18166631 - 18166719
Alignment:
Q  200 ttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    ||||||||||||||||||| |||    || |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  18166631 ttggcttaattaatgatttggtcccttaaattatttgttggttacattttgatctcataagttattaacgttacaatttggtcccttaa 18166719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 192 - 312
Target Start/End: Original strand, 42962758 - 42962882
Alignment:
Q  192 atagttatttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaactt 287  Q
    |||||| || ||||||||||||||||| |||    | |||||||||||||| |||||||||| ||||||| | |||||||||| ||||||||||||| ||    
T  42962758 atagtttttaggcttaattaatgatttggtcccttaggttatttgttggttgcattttgatctcataagtgactaacgttacaatttggtcccttaagtt 42962857  T
Q  288 ataattcgttagccaaataaatcct 312  Q
    |  ||  ||||||||||||||||||    
T  42962858 agtatatgttagccaaataaatcct 42962882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 226 - 312
Target Start/End: Original strand, 4409188 - 4409274
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    ||||||||| |||||| |||| || ||||||||||||||||||| |||||||||||||| ||| | |  ||||||||| ||||||||    
T  4409188 ttatttgttagttacaatttggtctcataagttattaacgttacgttttggtcccttaagttaaattatgttagccaagtaaatcct 4409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 38694913 - 38694972
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||  |||||||||||    
T  38694913 aagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 38694972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 42963079 - 42963020
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  || |||||||||||||||||||| |||||| ||||    
T  42963079 aagttatttgttggttacattttagtctcataagttattaacgttacaatttggtgcctt 42963020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 18171388 - 18171335
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtcc 279  Q
    ||||||||||||||||||||  ||||||||||||||||  ||||| ||||||||    
T  18171388 ttatttgttggttacattttagtcccataagttattaaaattacaatttggtcc 18171335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 241 - 328
Target Start/End: Complemental strand, 34128343 - 34128256
Alignment:
Q  241 attttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaattttgt 328  Q
    ||||||||| ||||| ||| |||| |||| |||| ||||||||| ||||| |  ||||| |||||||||||||  |||||| ||||||    
T  34128343 attttgatctcataacttaataacattacgttttagtcccttaatttatactctgttagtcaaataaatccttgatgttaacttttgt 34128256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 519 - 561
Target Start/End: Original strand, 4733638 - 4733680
Alignment:
Q  519 tttgaaattgttgaatgttgaaattcctcttagagggtgacgg 561  Q
    ||||||||||||||||||||||||| || ||||||| ||||||    
T  4733638 tttgaaattgttgaatgttgaaattgcttttagaggatgacgg 4733680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 9379955 - 9380060
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    |||||||||||||||||||||||| | ||| |||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||| ||||||    
T  9379955 aagttatttgttggttacattttggttccacaagttattaacgttacgttttggtcccttaacttataatatgttagccaaataaatcctttccgttaaa 9380054  T
Q  323 ttttgt 328  Q
    ||||||    
T  9380055 ttttgt 9380060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 9380764 - 9380659
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||  ||||| ||||||||||||| | ||||||    
T  9380764 aagttatttgttggttacattttgatcccataagttattaatgttacgttttggtcccttcacttataatatgttagtcaaataaatccttcccgttaaa 9380665  T
Q  323 ttttgt 328  Q
    ||||||    
T  9380664 ttttgt 9380659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 1501142 - 1501037
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    ||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||| |||||||     
T  1501142 aagttatttattggtttcattttggtcccataaattattaacgttacattttggtcccttaagttatattccgttagtcaaataaatccttgctgttaac 1501043  T
Q  323 ttttgt 328  Q
    ||||||    
T  1501042 ttttgt 1501037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 23322434 - 23322320
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||  ||  |||    
T  23322434 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatatgtt 23322335  T
Q  298 agccaaataaatcct 312  Q
    |||||||||||||||    
T  23322334 agccaaataaatcct 23322320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 202 - 318
Target Start/End: Complemental strand, 5841213 - 5841093
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    || ||||||||||||||||||||| |||||||| |||||||||||||| |||||| | |||| |||  ||| |||    
T  5841213 ggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataaattattaacgttacaatttggttctttaagttagtatttgtt 5841114  T
Q  298 agccaaataaatcctttctgt 318  Q
    |||||||||||||||| ||||    
T  5841113 agccaaataaatccttactgt 5841093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 196 - 311
Target Start/End: Original strand, 34634062 - 34634181
Alignment:
Q  196 ttatttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataa 291  Q
    ||||| ||||||||||||||| | |||    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||| ||| |     
T  34634062 ttattaggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataagttattaacgttacattttggtccattaagttagac 34634161  T
Q  292 ttcgttagccaaataaatcc 311  Q
    |  ||||| |||||||||||    
T  34634162 tctgttagtcaaataaatcc 34634181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 25088429 - 25088518
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||  |||  ||  ||||||||||||||||||    
T  25088429 aagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcct 25088518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 25146398 - 25146487
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    |||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||||||  |||  ||  ||||||||||||||||||    
T  25146398 aagttatttgttggttacattttggtcgcataaattattaacgttacaatttggtcccttatgttagtatctgttagccaaataaatcct 25146487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 43183227 - 43183314
Alignment:
Q  199 tttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||||| |||| |||    |||||||||||||||||||||||| |||||||| |||||||| ||||| |||||||||||    
T  43183227 tttggcttaattaataatttggtcccttaagttatttgttggttacattttggtcccataaattattaacattacaatttggtccctt 43183314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 202 - 284
Target Start/End: Original strand, 42792948 - 42793034
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    ||||||||||||||||| |||    |||||||||||||||| ||||||| |||||||| ||||||| |||||| |||||||||||||    
T  42792948 ggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataaattattaatgttacaatttggtcccttaa 42793034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 23322123 - 23322182
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||||    
T  23322123 aagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 23322182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 5840902 - 5840961
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||||||| |||||  | ||||||||||||||||||||| |||| ||||||    
T  5840902 aagttatttgttggttatattttagtgccataagttattaacgttacaatttgatccctt 5840961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 264
Target Start/End: Complemental strand, 20244588 - 20244521
Alignment:
Q  201 tggcttaattaatgattttgtca----agttatttgttggttacattttgatcccataagttattaac 264  Q
    ||||||||||||||||||||| |    | ||||||||||||||||||||| |||||||| ||||||||    
T  20244588 tggcttaattaatgattttgttacttaaattatttgttggttacattttggtcccataaattattaac 20244521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 282
Target Start/End: Original strand, 15933384 - 15933440
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||| |||||  || |||||||||||||||||||| ||| |||||||    
T  15933384 ttatttgttggttatattttagtctcataagttattaacgttacaatttagtccctt 15933440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 5e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 203 - 324
Target Start/End: Complemental strand, 32539520 - 32539395
Alignment:
Q  203 gcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtta 298  Q
    |||||||||||||||| |||    ||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttacattttaatctcataagttattaacattacatttttgtcccttaacttataatccgtta 32539421  T
Q  299 gccaaataaatcctttctgttaaatt 324  Q
    |||||||||||| | ||| |||||||    
T  32539420 gccaaataaatcttatctcttaaatt 32539395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 10536000 - 10536128
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||||||| ||||  |||    
T  10536000 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataagatattaacattacgttttggtcccttaacttgtaatatgtt 10536099  T
Q  298 agccaaataaatcctttctgttaaatttt 326  Q
    || ||||||||||||||| ||||||||||    
T  10536100 agtcaaataaatcctttccgttaaatttt 10536128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 202 - 324
Target Start/End: Complemental strand, 10536863 - 10536737
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| |  |||    
T  10536863 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtctgtt 10536764  T
Q  298 agccaaataaatcctttctgttaaatt 324  Q
    || |||||||||| |||| ||||||||    
T  10536763 agtcaaataaatcatttccgttaaatt 10536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 30906037 - 30905978
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||||||    
T  30906037 aagttatttgttggttacattttagtcccataagttattaacgttacaatttggtccctt 30905978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 18203398 - 18203306
Alignment:
Q  196 ttatttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    |||||| |||||||||||||||| |||    ||||||||| ||||||| |||||| | ||||||||||||||||||||| ||| ||| |||||    
T  18203398 ttatttagcttaattaatgatttggtcccttaagttatttattggttatattttggttccataagttattaacgttacaatttagtctcttaa 18203306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 32538284 - 32538325
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaac 264  Q
    ||||||||||||||||||||||||||| ||||||||||||||    
T  32538284 aagttatttgttggttacattttgatctcataagttattaac 32538325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 203 - 284
Target Start/End: Original strand, 30905397 - 30905482
Alignment:
Q  203 gcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    |||||||||||||||| |||    || |||||||||||||| ||||| || | |||| |||||||||||||| |||||||||||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggttatattttaattctataacttattaacgttacaatttggtcccttaa 30905482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 5425483 - 5425546
Alignment:
Q  248 tcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    |||||||| ||||||| ||||||||||||| | |||| ||| | ||||||| |||||||||||||    
T  5425483 tcccataacttattaatgttacattttggt-ctttaagttagacttcgttaaccaaataaatcct 5425546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 275
Target Start/End: Original strand, 18202798 - 18202850
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttg 275  Q
    ||||||||||||| |||||||||  || ||||||||||||| |||||| ||||    
T  18202798 aagttatttgttgattacattttcgtctcataagttattaatgttacaatttg 18202850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 223 - 328
Target Start/End: Complemental strand, 18471817 - 18471712
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    ||||||| |||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||  |||||||||||||||| |||| ||||||    
T  18471817 aagttatctgttggttacattttggtctcataagttattaacattatattttggtcccttaacttataatctgttagccaaataaatcatttccgttaaa 18471718  T
Q  323 ttttgt 328  Q
    ||||||    
T  18471717 ttttgt 18471712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 202 - 326
Target Start/End: Original strand, 18470139 - 18470267
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||||||     || |||||||||||||||||||||  | ||||||||||||| ||||  ||||||||||||||||||||||  |||    
T  18470139 ggcttaattaatgattttgtgccttaaattatttgttggttacattttggccacataagttattaatgttaggttttggtcccttaacttataatctgtt 18470238  T
Q  298 agccaaataaatcctttctgttaaatttt 326  Q
    || ||||||||||||||| ||||||||||    
T  18470239 agtcaaataaatcctttccgttaaatttt 18470267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 328
Target Start/End: Original strand, 8328220 - 8328325
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaa 322  Q
    ||||||||| || |||| |||||| || || |||||||||||||||| |||| |||||||||||||||||  ||||||||||||||||||||| ||||||    
T  8328220 aagttatttattagttagattttggtctcacaagttattaacgttacgttttagtcccttaacttataatatgttagccaaataaatcctttccgttaaa 8328319  T
Q  323 ttttgt 328  Q
    ||||||    
T  8328320 ttttgt 8328325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 4265312 - 4265198
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |||| |||  ||  |||    
T  4265312 ggcttaattaatgatttggtcccttaagttagttgtcggttacattttgatcccataagttattaacgttacaatttggtccattaagttagtatctgtt 4265213  T
Q  298 agccaaataaatcct 312  Q
     ||||||||||||||    
T  4265212 tgccaaataaatcct 4265198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 8594089 - 8594185
Alignment:
Q  225 gttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaa 321  Q
    ||||||||||| ||| |||||| ||||||||||| ||||| |||| ||||||||||||||||| ||||| ||||||||| |||||||| ||| ||||    
T  8594089 gttatttgttgattatattttggtcccataagttcttaacattacgttttggtcccttaacttgtaatttgttagccaattaaatcctatcttttaa 8594185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 8905639 - 8905753
Alignment:
Q  201 tggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgt 296  Q
    ||||||||| |||||||| |||    |||||||||||||||||||||||| || ||||||||||||| |||||| |||| ||||  || |||  ||| ||    
T  8905639 tggcttaatcaatgatttggtctcttaagttatttgttggttacattttggtctcataagttattaatgttacaatttgatccc-aaagttagtatttgt 8905737  T
Q  297 tagccaaataaatcct 312  Q
    ||||||||||||||||    
T  8905738 tagccaaataaatcct 8905753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 203 - 277
Target Start/End: Complemental strand, 8329115 - 8329038
Alignment:
Q  203 gcttaattaatgattttgtc---aagttatttgttggttacattttgatcccataagttattaacgttacattttggt 277  Q
    ||||||||||||| || |||   |||||||||||||||||||||||| || || |||||||||||||||| |||||||    
T  8329115 gcttaattaatgaattggtctttaagttatttgttggttacattttggtctcaaaagttattaacgttacgttttggt 8329038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 25749441 - 25749396
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgtta 268  Q
    ||||||||||||||||||| |||  || ||||||||||||||||||    
T  25749441 aagttatttgttggttacaatttagtctcataagttattaacgtta 25749396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 202 - 324
Target Start/End: Original strand, 28450750 - 28450876
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||||| | ||||    
T  28450750 ggcttaattaatgatttggtcccttaaattatttgttggttacattttgatcccataagttattaatgttacgttttggtcccctaacttatagtccgtt 28450849  T
Q  298 agccaaataaatcctttctgttaaatt 324  Q
    || |||||||||| |||| ||||||||    
T  28450850 agtcaaataaatcatttccgttaaatt 28450876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 202 - 326
Target Start/End: Complemental strand, 28451612 - 28451484
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| || |||||| ||||||| |||| ||||||||||||||||| ||||  |||    
T  28451612 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtctcataagatattaacattacgttttggtcccttaacttgtaatctgtt 28451513  T
Q  298 agccaaataaatcctttctgttaaatttt 326  Q
    || ||||||||||||||| ||||||||||    
T  28451512 agtcaaataaatcctttccgttaaatttt 28451484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 202 - 313
Target Start/End: Complemental strand, 9450994 - 9450879
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||| |  |||    
T  9450994 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttacgttttggtcccttaactcatactctgtt 9450895  T
Q  298 agccaaataaatcctt 313  Q
    ||||||||||||||||    
T  9450894 agccaaataaatcctt 9450879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 9268020 - 9268137
Alignment:
Q  199 tttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattc 294  Q
    |||||||||||||||||||| |||    ||||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||| |||  |||     
T  9268020 tttggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataagttattaaagttacaatttggtcccttaagttagtattt 9268119  T
Q  295 gttagccaaataaatcct 312  Q
    ||||||||||||||||||    
T  9268120 gttagccaaataaatcct 9268137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 204 - 310
Target Start/End: Complemental strand, 12585492 - 12585382
Alignment:
Q  204 cttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttag 299  Q
    ||||||||||||||| |||    ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||  ||  |||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttacattttgatctcataagttattaacattacaatttggtcccttaagttagtatatgttag 12585393  T
Q  300 ccaaataaatc 310  Q
    |||||||||||    
T  12585392 ccaaataaatc 12585382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 199 - 312
Target Start/End: Complemental strand, 3991014 - 3990897
Alignment:
Q  199 tttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattc 294  Q
    ||||||||||||| |||||| |||    |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||      
T  3991014 tttggcttaattattgatttggtcccttaagttaattgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttaatatct 3990915  T
Q  295 gttagccaaataaatcct 312  Q
     |||||||||||||||||    
T  3990914 attagccaaataaatcct 3990897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 49028600 - 49028487
Alignment:
Q  201 tggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgt 296  Q
    |||||||||||||||||| |||    ||||||||| |||||||||||||| |||||||| ||||||| |||||| ||||||||||||| |||  ||| ||    
T  49028600 tggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataaattattaatgttacaatttggtcccttaagttagtatttgt 49028501  T
Q  297 tagccaaataaatc 310  Q
    ||||||||||||||    
T  49028500 tagccaaataaatc 49028487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 52677577 - 52677666
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| |||| |||  ||  ||||||||||||||||||    
T  52677577 aagttatttgttggttacaatttggtcccataagttattaacgttacaatttggtccattaagttagtatatgttagccaaataaatcct 52677666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 9449715 - 9449830
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||| ||||| || ||||||||||||||||||| ||||| |||||| ||| ||| |  |||    
T  9449715 ggcttaattaatgatttggtccattaagttatttgttggttacgttttggtctcataagttattaacgttacgttttgatcccttgactcatactctgtt 9449814  T
Q  298 agccaaataaatcctt 313  Q
    |||||| |||||||||    
T  9449815 agccaagtaaatcctt 9449830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 201 - 312
Target Start/End: Complemental strand, 10468817 - 10468702
Alignment:
Q  201 tggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgt 296  Q
    ||||||||||||| |||| |||    |||||||||||||||||||||||| || |||||||||||||||||||| |||||||| |||| |||  ||  |     
T  10468817 tggcttaattaatcatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttggtccgttaagttagtatctgc 10468718  T
Q  297 tagccaaataaatcct 312  Q
    ||||||||||||||||    
T  10468717 tagccaaataaatcct 10468702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 311
Target Start/End: Original strand, 4437708 - 4437793
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcc 311  Q
    |||||||||||||||| |||| |||||||||||||||||||||| ||||||||| |||| ||| | |  |||||||||||||||||    
T  4437708 ttatttgttggttacaatttggtcccataagttattaacgttacgttttggtcctttaagttagactctgttagccaaataaatcc 4437793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 199 - 312
Target Start/End: Original strand, 622056 - 622171
Alignment:
Q  199 tttggcttaattaatgattttgtc---aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcg 295  Q
    ||||||||||||  |||||| |||   ||||||||||||| ||| |||||||||| ||| ||||||||||||| | ||||||||||||| |||  ||| |    
T  622056 tttggcttaatttttgatttagtccataagttatttgttgattatattttgatcc-atacgttattaacgttataatttggtcccttaaattagtatttg 622154  T
Q  296 ttagccaaataaatcct 312  Q
    |||||||||||||||||    
T  622155 ttagccaaataaatcct 622171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 203 - 312
Target Start/End: Original strand, 45667232 - 45667345
Alignment:
Q  203 gcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtta 298  Q
    |||||||||||||||| |||    |||||||||||||||||||||||| || |||||||||||||||||||| |||| |   |||| |||  ||  ||||    
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttacattttggtctcataagttattaacgttacaatttgattttttaatttaatatctgtta 45667331  T
Q  299 gccaaataaatcct 312  Q
    ||||||||||||||    
T  45667332 gccaaataaatcct 45667345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 202 - 282
Target Start/End: Original strand, 10286410 - 10286494
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||  |||||| |||||||||||||||| |||| ||||||    
T  10286410 ggcttaattaatgatttggtcccttaagttatttgttggttacattttagtcccattagttattaacgttacaatttgatccctt 10286494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 4439084 - 4439023
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||| |||||||| |||||    
T  4439084 aagttatttgttggttacaatttggtctcataagttattaacgttacgttttggtctcttaa 4439023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 223 - 311
Target Start/End: Original strand, 17931313 - 17931401
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcc 311  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||||||   ||||||||||| ||| | | ||| |||||| |||||||    
T  17931313 aagttatttattggttacaatttggtcccataagttattaacgttacaaaatggtcccttaagttacactccgtcagccaattaaatcc 17931401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 49028288 - 49028347
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  |||||||| |||||||||||||  |||||||||||    
T  49028288 aagttatttgttggttacattttagtcccataaattattaacgttaccatttggtccctt 49028347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 16067632 - 16067578
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtccc 280  Q
    ||||||||||||||||||||  || |||||||||||||||||||| |||||||||    
T  16067632 ttatttgttggttacattttagtctcataagttattaacgttacaatttggtccc 16067578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 205 - 284
Target Start/End: Original strand, 25225793 - 25225876
Alignment:
Q  205 ttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    |||||||||||||| |||    ||||||||||||||||| |||||| || |||||||||||||||||||| ||| ||| |||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggttatattttggtctcataagttattaacgttacaattttgtcgcttaa 25225876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 16067349 - 16067438
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    |||||||||||||||||||||||  | | |||| |||||||||||||| |||||||  |||| |||  ||| | ||||||||||||||||    
T  16067349 aagttatttgttggttacattttagttctataaattattaacgttacaatttggtcttttaagttagtatttgctagccaaataaatcct 16067438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 21038119 - 21038226
Alignment:
Q  206 taattaatgattttgtc---aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagcca 302  Q
    ||||||||||||| |||   ||||| ||||||| ||| |||||| | | ||||||||||||||||||| |||||||| |||| |||  ||  ||||||||    
T  21038119 taattaatgatttggtccttaagttgtttgttgattatattttggttcaataagttattaacgttacaatttggtcctttaagttagtatatgttagcca 21038218  T
Q  303 aataaatc 310  Q
    ||||||||    
T  21038219 aataaatc 21038226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 10202706 - 10202769
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttat 289  Q
    ||||||| ||||||||||||| |||||||| |||||||||||||| |||| | |||||| ||||    
T  10202706 ttatttgctggttacattttggtcccataaattattaacgttacaatttgatgccttaagttat 10202769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 17932213 - 17932125
Alignment:
Q  200 ttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    |||||||||||||||| || |||    ||||||||| ||||||||| |||| |||||||||||||||| ||||||   |||||||||||    
T  17932213 ttggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataagttattaaggttacaaaatggtcccttaa 17932125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 52677861 - 52677804
Alignment:
Q  225 gttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||  || ||||||||||||| |||| | |||||||||||    
T  52677861 gttatttgttggttacattttagtctcataagttattaatgttataatttggtccctt 52677804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 10468505 - 10468564
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  ||   |||||| ||||||||||| |||||||||||    
T  10468505 aagttatttgttggttacattttagtcatctaagtttttaacgttacaatttggtccctt 10468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 12585183 - 12585242
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||| |||||||||  || |||||||||||||| ||||| |||| ||||||    
T  12585183 aagttatttgttgattacattttagtctcataagttattaacattacaatttgatccctt 12585242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 36098770 - 36098829
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||||||| |||||  | |||||| |||||||||||| | |||||||||||    
T  36098770 aagttatttgttggttatattttagttccataaattattaacgttataatttggtccctt 36098829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 12315852 - 12315915
Alignment:
Q  199 tttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagtt 258  Q
    |||||||||||||||||||| |||    ||||||||||| ||||||| |||| |||||||||||    
T  12315852 tttggcttaattaatgatttggtcctttaagttatttgtaggttacaatttggtcccataagtt 12315915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 21325738 - 21325689
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttg 275  Q
    ||||||||||||||||||||  || ||| ||||||||||||||| |||||    
T  21325738 ttatttgttggttacattttagtcacattagttattaacgttacgttttg 21325689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 27864799 - 27864913
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||  ||| |||    
T  27864799 ggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcccttaagttagtatttgtt 27864898  T
Q  298 agccaaataaatcct 312  Q
    |||||||||||||||    
T  27864899 agccaaataaatcct 27864913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 46684098 - 46684210
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||  | |||     
T  46684098 ggcttaattaatgatttggtcgcttaagttatttgttggttacattttgatcccataagttattaacattacgttttggtcccttaagttatcttccgtc 46684197  T
Q  298 agccaaataaatc 310  Q
    |||||||||||||    
T  46684198 agccaaataaatc 46684210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 202 - 309
Target Start/End: Original strand, 16907930 - 16908041
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||||||||| ||||| |||||||||||||||||||||  |||||||||||||||| ||| |  |||    
T  16907930 ggcttaattaatgatttggtcccttaagttatttgttggttacgttttggtcccataagttattaacgttatgttttggtcccttaactcatactctgtt 16908029  T
Q  298 agccaaataaat 309  Q
    ||||||||||||    
T  16908030 agccaaataaat 16908041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 202 - 312
Target Start/End: Original strand, 24107151 - 24107265
Alignment:
Q  202 ggcttaattaatgattttgtca----agttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||     ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||   |  |||    
T  24107151 ggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataagttattaacgttacaatttggtcacttaagttagtttctgtt 24107250  T
Q  298 agccaaataaatcct 312  Q
    |||||||||||||||    
T  24107251 agccaaataaatcct 24107265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 202 - 280
Target Start/End: Complemental strand, 31596823 - 31596740
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgtta-cattttggtccc 280  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  31596823 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttattaacgttaccattttggtccc 31596740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 38758945 - 38758832
Alignment:
Q  200 ttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcg 295  Q
    ||||||||||||||||||| |||    |||||||||||||||||||||||| ||||||||||||| ||||||| | ||||||||| ||| |||  ||  |    
T  38758945 ttggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataagttatcaacgttataatttggtccc-taagttagtatatg 38758847  T
Q  296 ttagccaaataaatc 310  Q
    |||||||||||||||    
T  38758846 ttagccaaataaatc 38758832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 223 - 284
Target Start/End: Complemental strand, 27865109 - 27865048
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| |||||||| ||||    
T  27865109 aagttatttgttggttacattttagtcccataagttattaacgttacaatttggtcctttaa 27865048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 3171514 - 3171573
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||||    
T  3171514 aagttatttgttggttacattttagtcccataagttattaatgttacaatttggtccctt 3171573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 38758633 - 38758692
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||| ||| |||||||    
T  38758633 aagttatttgttggttacattttagtcccataagttattaacgttacaatttagtccctt 38758692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 54446045 - 54446104
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||| ||||||||| |||| ||||||||||||||||||| |||||||||||    
T  54446045 aagttatttgttgattacattttaatcctataagttattaacgttacaatttggtccctt 54446104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 284
Target Start/End: Original strand, 19860516 - 19860577
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaa 284  Q
    ||||||||| |||||||||||||  ||||||||||||||||||||||| |||||||| ||||    
T  19860516 aagttatttattggttacattttagtcccataagttattaacgttacaatttggtcctttaa 19860577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 24107462 - 24107405
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccc 280  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||| |||||||||    
T  24107462 aagttaattgttggttacattttagtcccataagttattaacgttacaatttggtccc 24107405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 18026162 - 18026103
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||  ||| |||||||    
T  18026162 aagttatttgttggttacattttagtcccataagttattaacgttaccatttagtccctt 18026103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 21792245 - 21792300
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttggtccct 281  Q
    ||||| ||||||||||||||  ||||||||||||||||||||||| ||||||||||    
T  21792245 ttattggttggttacattttagtcccataagttattaacgttacaatttggtccct 21792300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 312
Target Start/End: Original strand, 14812452 - 14812541
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    ||||||||| || ||||||||||| ||||||||||||||||||||||| |||  |||||||  |||  ||| || ||||| |||||||||    
T  14812452 aagttattttttagttacattttggtcccataagttattaacgttacaattttctcccttaggttagtatttgtgagccatataaatcct 14812541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 312
Target Start/End: Complemental strand, 19860800 - 19860712
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    ||||||||| |||||||||||||| || || ||||||||||| ||||| |||||||| |||| ||| |||   |||||||||||||||||    
T  19860800 aagttatttattggttacattttggtctca-aagttattaacattacaatttggtcctttaagttaaaatctattagccaaataaatcct 19860712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 307
Target Start/End: Complemental strand, 21792428 - 21792343
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtc-ccttaacttataattcgttagccaaataa 307  Q
    ||||||||||||| |||||||||| |||  |||||||||||||||||| ||||||| |||||| |||  ||| || ||||||||||    
T  21792428 aagttatttgttgtttacattttggtcctctaagttattaacgttacaatttggtctccttaagttagtatttgtaagccaaataa 21792343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 202 - 311
Target Start/End: Complemental strand, 46685601 - 46685488
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    || |||||| |||||||||||||| ||||||||||||||| | |||| || | ||||||||| ||||  | |||     
T  46685601 ggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataagttattatcattacgttatagtcccttaagttatcttccgtc 46685502  T
Q  298 agccaaataaatcc 311  Q
    | ||||||||||||    
T  46685501 aaccaaataaatcc 46685488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 259 - 326
Target Start/End: Complemental strand, 24360526 - 24360459
Alignment:
Q  259 attaacgttacattttggtcccttaacttataattcgttagccaaataaatcctttctgttaaatttt 326  Q
    ||||||||||||||||| ||| |||||||| ||||| || |||||||||||| ||||| |||| ||||    
T  24360526 attaacgttacattttgatcctttaacttacaattcatttgccaaataaatcatttctattaagtttt 24360459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 205 - 312
Target Start/End: Complemental strand, 54446349 - 54446237
Alignment:
Q  205 ttaattaatgattttgtc----aagttatttgttggttacatttt-gatcccataagttattaacgttacattttggtcccttaacttataattcgttag 299  Q
    |||||||||||||| |||    |||||||||||| |||||||||| | ||| ||||||||||||| ||||| |||||||  |||| |||  ||  |||||    
T  54446349 ttaattaatgatttggtcccttaagttatttgttagttacatttttggtcctataagttattaacattacaatttggtcttttaagttagtatatgttag 54446250  T
Q  300 ccaaataaatcct 312  Q
    |||||||||||||    
T  54446249 ccaaataaatcct 54446237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 18025878 - 18025941
Alignment:
Q  200 ttggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagtta 259  Q
    ||||||||||||||| ||| |||    |||||||||||||||||||||||| ||||||||||||    
T  18025878 ttggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataagtta 18025941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 3171822 - 3171711
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttac-attttggtcccttaacttataattcgt 296  Q
    ||||||||||||||||| |||    ||||||||||| ||||||||||| ||||||    ||||||| ||||| | ||||||||||||| |||  ||  ||    
T  3171822 ggcttaattaatgatttggtcccttaagttatttgtcggttacattttcatccca----ttattaatgttacaaatttggtcccttaagttagtatctgt 3171727  T
Q  297 tagccaaataaatcct 312  Q
    | ||||||||||||||    
T  3171726 tggccaaataaatcct 3171711  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 246
Target Start/End: Original strand, 11422377 - 11422427
Alignment:
Q  200 ttggcttaattaatgattttgtc----aagttatttgttggttacattttg 246  Q
    ||||||||||||||||||| |||    ||||||||||||||||||||||||    
T  11422377 ttggcttaattaatgatttggtcccttaagttatttgttggttacattttg 11422427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 4e-30; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 5367750 - 5367637
Alignment:
Q  202 ggcttaattaatgattttgtc---aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtta 298  Q
    ||||||||||||||||| |||   |||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| |||  ||| ||||    
T  5367750 ggcttaattaatgatttggtccttaagttatttgttggttacattttggttccataagttattaacgttacaatttggtcccttaagttagtatttgtta 5367651  T
Q  299 gccaaataaatcct 312  Q
    ||||||||||||||    
T  5367650 gccaaataaatcct 5367637  T

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Target: chr6; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 202 - 312
Target Start/End: Complemental strand, 3659287 - 3659174
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgtt 297  Q
    ||||||||||||||||| |||    |||||||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||  ||| |||    
T  3659287 ggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataagttattaac-ttacaatttggtcccttaagttagtatttgtt 3659189  T
Q  298 agccaaataaatcct 312  Q
    |||||||||||||||    
T  3659188 agccaaataaatcct 3659174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 8286788 - 8286879
Alignment:
Q  202 ggcttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttat 289  Q
    ||||||||||||||||| |||    |||||||||||||||||||||||| |||| ||||| |||||||||||||||| || |||||| ||||    
T  8286788 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccttaagtaattaacgttacattttagttccttaagttat 8286879  T

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Target: chr6; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 237 - 312
Target Start/End: Original strand, 3720090 - 3720165
Alignment:
Q  237 ttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagccaaataaatcct 312  Q
    |||||||||| |||||||| |||||| | |||| | ||||||||||||||| ||||||||||||||| ||||||||    
T  3720090 ttacattttggtcccataatttattagcattacgtgttggtcccttaacttttaattcgttagccaattaaatcct 3720165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 3658977 - 3659036
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||| ||||||||| |||  |||||||||||||||| |||||| |||| ||||||    
T  3658977 aagttatttattggttacagtttagtcccataagttattaaagttacaatttgatccctt 3659036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 277
Target Start/End: Original strand, 28944270 - 28944324
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggt 277  Q
    |||| |||||||||||||||||| ||| | ||||||||||| |||||| ||||||    
T  28944270 aagtcatttgttggttacattttaatctcgtaagttattaatgttacaatttggt 28944324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 204 - 312
Target Start/End: Original strand, 19897 - 20009
Alignment:
Q  204 cttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttag 299  Q
    ||||||||||||||| |||    |||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||| |||  ||  |||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttacattttggtcgcataagttattaacgttacaatttggtcccttaagttagtatctgttag 19996  T
Q  300 ccaaataaatcct 312  Q
    |||||||||||||    
T  19997 ccaaataaatcct 20009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 282
Target Start/End: Complemental strand, 20210 - 20151
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    ||||||||||||||||| ||||| || |||||| |||||||||||||| |||||||||||    
T  20210 aagttatttgttggttatattttaattccataatttattaacgttacaatttggtccctt 20151  T

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Target: scaffold0006 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 203 - 310
Target Start/End: Original strand, 93633 - 93743
Alignment:
Q  203 gcttaattaatgattttgtc---aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttag 299  Q
    ||||||||||||||||  ||   |||||||||||| ||||||||||| |||||||| |||||||||||||| ||| ||||||||| |||  ||| |||||    
T  93633 gcttaattaatgatttgatccttaagttatttgttagttacattttggtcccataaattattaacgttacaatttagtcccttaagttactatttgttag 93732  T
Q  300 ccaaataaatc 310  Q
    |||||||||||    
T  93733 ccaaataaatc 93743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 93939 - 93890
Alignment:
Q  226 ttatttgttggttacattttgatcccataagttattaacgttacattttg 275  Q
    ||||||||||||||||||||  |||||||| |||||||||||||| ||||    
T  93939 ttatttgttggttacattttagtcccataaattattaacgttacaatttg 93890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 310
Target Start/End: Complemental strand, 266953 - 266844
Alignment:
Q  205 ttaattaatgattttgtc----aagttatttgttggttacattttgatcccataagttattaacgttacattttggtcccttaacttataattcgttagc 300  Q
    |||||||||||||| |||    |||||||||||||||||||||||| || |||||||||||||| ||| | ||||||||||||| |||  ||  ||||||    
T  266953 ttaattaatgatttggtcctttaagttatttgttggttacattttggtcacataagttattaaccttataatttggtcccttaagttagtatctgttagc 266854  T
Q  301 caaataaatc 310  Q
    ||||||||||    
T  266853 caaataaatc 266844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 223 - 282
Target Start/End: Original strand, 266646 - 266705
Alignment:
Q  223 aagttatttgttggttacattttgatcccataagttattaacgttacattttggtccctt 282  Q
    |||||||||||||||||||||||  ||| |||||||||||| |||| | |||||||||||    
T  266646 aagttatttgttggttacattttagtccgataagttattaatgttataatttggtccctt 266705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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