View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7311_low_77 (Length: 216)

Name: NF7311_low_77
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7311_low_77
NF7311_low_77
[»] scaffold0062 (6 HSPs)
scaffold0062 (116-216)||(47481-47581)
scaffold0062 (116-216)||(60020-60120)
scaffold0062 (116-216)||(72139-72239)
scaffold0062 (1-91)||(59893-59983)
scaffold0062 (1-91)||(72016-72106)
scaffold0062 (9-91)||(47370-47452)
[»] chr8 (2 HSPs)
chr8 (116-216)||(18690830-18690930)
chr8 (1-91)||(18690707-18690797)
[»] chr2 (7 HSPs)
chr2 (116-216)||(15698569-15698669)
chr2 (116-216)||(15711108-15711208)
chr2 (116-216)||(15723586-15723686)
chr2 (1-91)||(15710981-15711071)
chr2 (1-91)||(15723459-15723549)
chr2 (18-91)||(15698467-15698540)
chr2 (43-86)||(15743950-15743993)


Alignment Details
Target: scaffold0062 (Bit Score: 97; Significance: 8e-48; HSPs: 6)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 47481 - 47581
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  47481 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 47580  T
Q  216 c 216  Q
    |    
T  47581 c 47581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 60020 - 60120
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  60020 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 60119  T
Q  216 c 216  Q
    |    
T  60120 c 60120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 72139 - 72239
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  72139 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 72238  T
Q  216 c 216  Q
    |    
T  72239 c 72239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 59893 - 59983
Alignment:
Q  1 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  59893 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 59983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 72016 - 72106
Alignment:
Q  1 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  72016 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 72106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #6
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 47370 - 47452
Alignment:
Q  9 taattagttggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  47370 taattagttggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 47452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 18690830 - 18690930
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  18690830 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 18690929  T
Q  216 c 216  Q
    |    
T  18690930 c 18690930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 18690707 - 18690797
Alignment:
Q  1 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18690707 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 18690797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 15698569 - 15698669
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15698569 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 15698668  T
Q  216 c 216  Q
    |    
T  15698669 c 15698669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 15711108 - 15711208
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15711108 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 15711207  T
Q  216 c 216  Q
    |    
T  15711208 c 15711208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 116 - 216
Target Start/End: Original strand, 15723586 - 15723686
Alignment:
Q  116 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaatgattttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  15723586 ataatgtcccatactcatcagatcaatgctgttgtgaagccaatcatttttcgcgaatacattggtgtgaaagatatcccaaaaaatttaaaggattttc 15723685  T
Q  216 c 216  Q
    |    
T  15723686 c 15723686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15710981 - 15711071
Alignment:
Q  1 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15710981 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 15711071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 15723459 - 15723549
Alignment:
Q  1 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15723459 taccccattaattagttggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 15723549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 15698467 - 15698540
Alignment:
Q  18 ggatccgttggcttataaaagggcataagagttggtcattccaagcacaaccaatcaaacacacaaaaagcact 91  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15698467 ggatccgttggcttataaaagggcataagagttggtcattccaaccacaaccaatcaaacacacaaaaagcact 15698540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 15743993 - 15743950
Alignment:
Q  43 taagagttggtcattccaagcacaaccaatcaaacacacaaaaa 86  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||    
T  15743993 taagagttggtcattccaaccacaaccaatcaaacccacaaaaa 15743950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University