View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_8 (Length: 582)
Name: NF7311_low_8
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 380
Target Start/End: Original strand, 33127141 - 33127509
Alignment:
| Q |
13 |
aatattgaattaaggtaaagtggtggtagtttctttttgaggggaaagcatggtgtgtataaacactttcacctccattggttgttcctgaaaagagcta |
112 |
Q |
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| T |
33127141 |
aatattgaattaaggtaaagtggtggtagtttctttttgaggggaaagcatggtgtgtataaacactttcacctccattggttgttcctgaaaagagcta |
33127240 |
T |
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| Q |
113 |
aaccaccaaaactacatatatcaataagtaagtttggattacaagcataaactttgaaccatgttccacaccaaagacatgcataaaggagtctaag-nn |
211 |
Q |
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| T |
33127241 |
aaccaccaaaactacatatatcaataagcaagtttggattacaagcataaattttgaaccatgttccacaccaaagacatgcataaaggagtctaagaaa |
33127340 |
T |
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| Q |
212 |
nnnnnnnnnnnnnngttcaatttaattatttaatttaggttaacatgtctacaagtgagatcacgaaaatggaagaaggtgatcttaagacacaaacgaa |
311 |
Q |
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| T |
33127341 |
aagaaagaaaaaaagttcaatttaattatttaatttaggttaacatgtctacaagtgagatcacgaaaatggaagaaggtgatcttaagacacaaacaaa |
33127440 |
T |
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| Q |
312 |
aggagaatcagggttttgcggttctcctgaggtagttcaaatcatacaaaaggtacacatattaataat |
380 |
Q |
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| T |
33127441 |
aggagaatcagggttttgcggttctcctgaggtagttcaaatcatacaaaaggtacacatattaataat |
33127509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 372 - 565
Target Start/End: Original strand, 33127539 - 33127732
Alignment:
| Q |
372 |
attaataatatatagttttcattgatgttattgtgttgagtattgtgaattgaatatctttgtcactactaatgaatgttttatttaaaaattaaatgta |
471 |
Q |
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| T |
33127539 |
attaataatatatagttttcattgatgttattgtgttgagtattgtgaattgaatatctttgtcactactaatgaatgttttatttaaaaattaaatgta |
33127638 |
T |
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| Q |
472 |
tggaacaggtaatagcagaggtgataggaacatacttcttaatatttgcagggtgttgcgtagttgttctgaataaagtggaagaaactaaagg |
565 |
Q |
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| T |
33127639 |
tggaacaggtaatagcagaggtgataggaacatacttcttaatatttgcagggtgttgcgtagttgttctgaataaagtggaagaaactaaagg |
33127732 |
T |
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