View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7311_low_81 (Length: 208)
Name: NF7311_low_81
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_81 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 28609083 - 28608876
Alignment:
| Q |
1 |
ccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28609083 |
ccccttgctttatcatgacttgtggtgtccactattgcagctttaccaaacaggagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcc |
28608984 |
T |
|
| Q |
101 |
tccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaac |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28608983 |
tccatgcgacagataatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaac |
28608884 |
T |
|
| Q |
201 |
aaataatc |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
28608883 |
aaataatc |
28608876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 14 - 205
Target Start/End: Original strand, 437834 - 438025
Alignment:
| Q |
14 |
catgacttgtggtgtccactattgcagctttaccaaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagc |
113 |
Q |
| |
|
||||||||| |||||| |||||| |||| ||| |||||| |||||||||||||||| | ||||||||||| | |||||| ||| |||||||| ||||| |
|
|
| T |
437834 |
catgacttgaggtgtctactatttcagcattatcaaacaggagcatccgaaccactgataattgggttcctatgcgtcctgccattctccatgcaacagc |
437933 |
T |
|
| Q |
114 |
taatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaata |
205 |
Q |
| |
|
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||| |||||||||| ||| || ||||||| |
|
|
| T |
437934 |
taaggcttcgcgatcatcaggaccaccaacaaagatcatacaaatacgaaaatttaaagttggtaatgacccaagatcacggtccacaaata |
438025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 47 - 203
Target Start/End: Complemental strand, 13660408 - 13660252
Alignment:
| Q |
47 |
caaacaagagcatccgaaccactagaagttgggttcctaagtgtcctgtcatcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaa |
146 |
Q |
| |
|
||||||||||||||||||||| | | | |||||||| ||| || |||||||||||| |||||||| ||||| |||||||||||||||||| ||| |
|
|
| T |
13660408 |
caaacaagagcatccgaaccaatgataatcgggttcctgggtgccccaccatcctccatgcaacagctaaggcttcatgatcatcaggacctccaataaa |
13660309 |
T |
|
| Q |
147 |
gatcatacaaatacgaaaattcatttttggtaaggacccaagattacgatcaacaaa |
203 |
Q |
| |
|
|||||||||||| ||||| |||||||||| || ||||||||||||||||||||||| |
|
|
| T |
13660308 |
gatcatacaaattcgaaagttcatttttgttattgacccaagattacgatcaacaaa |
13660252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 96 - 203
Target Start/End: Complemental strand, 13652859 - 13652752
Alignment:
| Q |
96 |
catcctccatgcgacagctaatgcttcgcgatcatcaggacctccaacaaagatcatacaaatacgaaaattcatttttggtaaggacccaagattacga |
195 |
Q |
| |
|
|||||||||||| |||| ||| ||||| | |||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| | ||||||||||||| |
|
|
| T |
13652859 |
catcctccatgcaacagttaaggcttcatggtcatcagggccaccaacaaatatcatacaaattcgaaagttcattttcggtaatgtcccaagattacga |
13652760 |
T |
|
| Q |
196 |
tcaacaaa |
203 |
Q |
| |
|
|||||||| |
|
|
| T |
13652759 |
tcaacaaa |
13652752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University