View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7311_low_9 (Length: 569)
Name: NF7311_low_9
Description: NF7311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7311_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 13 - 551
Target Start/End: Original strand, 28270 - 28814
Alignment:
| Q |
13 |
aatatgtgttaaaaattgttatgtttccaatataattaatcattttctctgtaaaatatatatattggatacttttatttacttaaccaatggccatttt |
112 |
Q |
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| T |
28270 |
aatatgtgttaaaaattgttatgtttccaatataattaatcattttctctgtaaaatatatatattggatacttttatttacttaaccaatggccatttt |
28369 |
T |
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| Q |
113 |
tgttgaaaatatatgatttgtctttcttttcctactctgttgtgtgtttttcactcatcatgaaataaaatactaaatccaaatgannnnnnnagttgta |
212 |
Q |
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| T |
28370 |
tgttgaaaatatatcatttgtctttcttttcctactctgttgtgtgtctttcactcatcatgaaataaaatactaaatccaaatgatttttttagttgta |
28469 |
T |
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| Q |
213 |
tacgaaatgaatgtgaatagatgatgaaaggagggtaaagtgaatatatgaagaaagaaagagaacatacaggaggagaaaagagaggttggaaggaaat |
312 |
Q |
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| T |
28470 |
tacgaaatgaatgtgaatagatgatgaaaggagggtaaagtgaatatatgaagaaagaaagagaacatacaggaggagaaaagagaggttggaaggaaat |
28569 |
T |
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| Q |
313 |
ggcagtgagaacgaggatggagaggctttgcaatgcttgatggtgatgcagcagcagcagcaccacaaatgcttacagttgctcttgctgttgctagccc |
412 |
Q |
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| T |
28570 |
ggcagtgagaacgaggatggagaggctttgcaatgcttgatggtgatgcagcagcagcagcaccacaaatgcttacagttgctcttgctgttgctagccc |
28669 |
T |
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| Q |
413 |
catcttcactttactgct------ttctagtgctagtgctagtgctacctcactcgttaatcataattaatatcttgctcnnnnnnngtgtggttttcat |
506 |
Q |
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| T |
28670 |
catcttcactttactgcttcctagtgctagtgctagtgctagtgctacctcactcattaatcataattaatatcttgctctttttttgtgtggttttcat |
28769 |
T |
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| Q |
507 |
taaatctatgttaaccaatcctcaactcatcacaaacagccaaac |
551 |
Q |
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| T |
28770 |
taaatctatgttaaccaatcctcaactcatcacaaacagccaaac |
28814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 252 - 360
Target Start/End: Original strand, 21353917 - 21354030
Alignment:
| Q |
252 |
gtgaatatatgaagaaagaaagagaa-----catacaggaggagaaaagagaggttggaaggaaatggcagtgagaacgaggatggagaggctttgcaat |
346 |
Q |
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| T |
21353917 |
gtgaatatatgaagacagaaagagaacagaacatacaggaagagaaaagagaggttggaaggaaatagcagtgagtacgaggatagagaagcttttcaat |
21354016 |
T |
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| Q |
347 |
gcttgatggtgatg |
360 |
Q |
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| T |
21354017 |
gcttgatgctgatg |
21354030 |
T |
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