View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7312_high_1 (Length: 384)
Name: NF7312_high_1
Description: NF7312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7312_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 45673616 - 45673251
Alignment:
| Q |
1 |
ttcattcaagataaagatatgagaaatgcatcaagatagagtgattgacacagtctcagagggagaaattgagaaggaggctttcaattttatacaacta |
100 |
Q |
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| T |
45673616 |
ttcattcaagataaagatatgagaaatgcatcaagatagagtgattgacacggtctcagagggagaaattgagaaggaggctttcaattttatacaacta |
45673517 |
T |
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| Q |
101 |
atgatagcgtcgttactacctgtgttgttgtggcttgagagtggaaaattggaaaaggtgtatctgaacccttgatttaatcggatggccatgtattgtt |
200 |
Q |
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| T |
45673516 |
atgatagcgtcgttactacctgtgttgttgtggcttgagagtggaaaattggaaaaggtgtatctgaacccttgatttaatcggatggccatgtattgtt |
45673417 |
T |
|
| Q |
201 |
tgactgcatgactgcattgtttttctgacagcagtgaatcacgttccctcaattaaccattgcgaagctacctctatctaacatattctcatccatccat |
300 |
Q |
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| T |
45673416 |
tgactgcatgactgcattgtttttctgacagcagtgaatcacgttccctcaattaaccattgcgaagctacctctatctaacatattctcatccatccat |
45673317 |
T |
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| Q |
301 |
ataaattagtcaaacccttgtaaaaagaaggaagaatacatagcgagtgagttgattagtcaaaaa |
366 |
Q |
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| T |
45673316 |
ataaattggtcaaacccttgtaaaaagaaggaagaatacatagcgagtgagttgattagtcaaaaa |
45673251 |
T |
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