View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7312_low_1 (Length: 464)
Name: NF7312_low_1
Description: NF7312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7312_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 14 - 455
Target Start/End: Complemental strand, 25896425 - 25895984
Alignment:
| Q |
14 |
atatcatccacataaaccagtaaatatgcaacacaattatgatgcttgtatatgaaaagagaagagtcatgcttgctgggacagaagccaaactcaatga |
113 |
Q |
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| T |
25896425 |
atatcatccacataaaccagtaaatatgcaacacaattatgatgcttgtatatgaaaagagaagagtcacgcttgctgtgacagaagccaaactcaatga |
25896326 |
T |
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| Q |
114 |
gagtgcctttcagcctttcaaaccattgtctgggtgcttgtttcaagccatataaagccttgtgcagatgacaaactagattagggtcagaggagacaaa |
213 |
Q |
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| T |
25896325 |
gagtgcctttcagcctttcaaaccattgtctgggtgcttgtttcaagccatataaagccttgtgcagatgacaaactagattaggatcagaggagacaaa |
25896226 |
T |
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| Q |
214 |
cccagggggttgttccatatagacttcctcaacaagaatgccattgagaaaggcattattaatgtccagctgctgaagtggccacttatatgtgagagcc |
313 |
Q |
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| T |
25896225 |
cccagggggttgttccatatagacttcctcatcaagaatgccattgagaaaggcattattaatgtccagctgctgaagtggccacttatatgtgagagcc |
25896126 |
T |
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| Q |
314 |
aatgtgaggatcaatctgatagtaacagcaggctttatgactggagaaaaagtttcatgataatcaaaaccatgaagtagatgataaccctaggctacta |
413 |
Q |
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| T |
25896125 |
aatgtgaggatcaatctgatagtaacagcaggctttatgactggagaaaaagtttcatgataatcaaaaccatgaagtagatgataaccctaggctacta |
25896026 |
T |
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| Q |
414 |
acatggctttttactaatttagggtcccatctgcatattctt |
455 |
Q |
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| T |
25896025 |
acctggctttttactaatttagggtcccatctgcattttctt |
25895984 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 39581818 - 39581737
Alignment:
| Q |
224 |
tgttccatatagacttcctcaacaagaatgccattgagaaaggcattattaatgtccagctgctgaagtggccacttatatg |
305 |
Q |
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|||| |||||| ||||| || |||| |||||||| | ||||||||||||| |||||||| |||||||||||||| |||| |
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| T |
39581818 |
tgttgcatatacacttcttcctcaaggatgccatttaagaaggcattattaacatccagctgttgaagtggccacttgtatg |
39581737 |
T |
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