View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7312_low_2 (Length: 441)
Name: NF7312_low_2
Description: NF7312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7312_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 15 - 424
Target Start/End: Original strand, 30707806 - 30708216
Alignment:
| Q |
15 |
gggcccgttgtgggggtatctttagttaacaagaaacagaataatgaagcaattcacgaaaaacaaaagacaacaatgaagcatatttt-ttgttttatt |
113 |
Q |
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| T |
30707806 |
gggcccattgtgggggtatctttagttaacaagaaacagaataatgaagcaattcatgaaaaacaaaagacaacaatgaagcatatttttttgttttatt |
30707905 |
T |
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| Q |
114 |
attcttgaatgtgactcacacattcacaagttacatacttctgcttttgatcaaagatgcccctgaacaaagtgaaacattatatcaactgaaaaacaaa |
213 |
Q |
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| T |
30707906 |
attcttgaatgtgactcacacattcacaagttacatacttctgcttttgatcaaagatgcccctgaacaaagtgaaacattatatcaactgaaaaacaaa |
30708005 |
T |
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| Q |
214 |
tttgaaacagttaccattgaagatgattctactattgagctgttgatcttaaccccctttcattaatttattatgtgccaagaattcaaacaaaatttta |
313 |
Q |
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| T |
30708006 |
tttgaaacagttaccattgaagatgattctactattgagctgttgatcttaaccccctttcattaatttattatgtgccaagaattcaaacaaaatttta |
30708105 |
T |
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| Q |
314 |
gactggatacaataagaatgcaccatcttaagaatttgcaattgacatgaaatgctgcnnnnnnngtccctccatttattccttcctagatgaatcatag |
413 |
Q |
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| T |
30708106 |
gactggatacaataagaatgcaacatcttaagaatttgcaattgacatgaaatgctgctttttttgtccctccatttattccttcctagatgaatcatag |
30708205 |
T |
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| Q |
414 |
tagatgaacat |
424 |
Q |
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| T |
30708206 |
tagatgaacat |
30708216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 292 - 363
Target Start/End: Original strand, 30716854 - 30716925
Alignment:
| Q |
292 |
caagaattcaaacaaaattttagactggatacaataagaatgcaccatcttaagaatttgcaattgacatga |
363 |
Q |
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| T |
30716854 |
caagaattcaaacaaaattttagtcttgatccaataagaacggaacattttaagaatttgcaattgacatga |
30716925 |
T |
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