View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7312_low_4 (Length: 315)
Name: NF7312_low_4
Description: NF7312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7312_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 294
Target Start/End: Original strand, 53098895 - 53099171
Alignment:
| Q |
19 |
ctcatttgtatttagtccgggaggttctattacttatttatctctcataatttaatccataataataatttactttgttttctttatgattgaggagtaa |
118 |
Q |
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| T |
53098895 |
ctcatttgtcttttgtccgtgaggttctattacttatttatctctcataatttaatccataataataatttacattgttttctttatgat----gagtaa |
53098990 |
T |
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| Q |
119 |
ttaaaagtgaattgtagaatgataaaatgagtttttaatctttaactacgatgcaaatatgatcttctacttctcctaatatctcaaattgctcaaaagg |
218 |
Q |
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| T |
53098991 |
ttaaaagggaattgtagaatgataaaatgagtttttaatctttaactacgatgcaaatatgatcttctacttctcctaatatctcaaaatgctcaaaaag |
53099090 |
T |
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| Q |
219 |
tacg-----tccaatccttatgggaaaaacaagaaaaagcatgatcagattaactcactcgtgggtgctttgaattgaatg |
294 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
53099091 |
tacgtccaatccaatccttatgggaaaaacaagaaaaagcatgatcagattaactcactcgtgggtgctttaaattgaatg |
53099171 |
T |
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