View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7313_high_11 (Length: 210)
Name: NF7313_high_11
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 105 - 198
Target Start/End: Original strand, 7141214 - 7141307
Alignment:
| Q |
105 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatatt |
198 |
Q |
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| T |
7141214 |
ataaccctaatttcctatttcctttgtttttccattaaattctgcacaaatattttagcctatggttttaaggtgcaattgctagtccaatatt |
7141307 |
T |
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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 7141138 - 7141216
Alignment:
| Q |
1 |
acaaagtggaagccttgatgtccaattgacaatcaacaacatcaaagctgtgatttgggttagtaacacttaacttata |
79 |
Q |
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| T |
7141138 |
acaaagtggtagccttgatgtccaattgacaatcaacaacatcaaagctgtgatttgggttagtaacacttaacttata |
7141216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 7152997 - 7153046
Alignment:
| Q |
29 |
acaatcaacaacatcaaagctgtgatttgggttagtaacacttaacttat |
78 |
Q |
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| T |
7152997 |
acaaccaacaacatcaaagctgtgatttgggttagttacaatgaacttat |
7153046 |
T |
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