View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7313_high_8 (Length: 268)
Name: NF7313_high_8
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_high_8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 4 - 268
Target Start/End: Original strand, 5317539 - 5317803
Alignment:
| Q |
4 |
acatcaagttagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgt |
103 |
Q |
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| T |
5317539 |
acatcaagttagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgt |
5317638 |
T |
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| Q |
104 |
tgctatgaaaggatgtgtggtttcactccttaggggacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggagccagagggatagactc |
203 |
Q |
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| T |
5317639 |
tgctatgaaaggatgtgtggtttcactccttaggagacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggagccagagagatagactc |
5317738 |
T |
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| Q |
204 |
tgggacatttaatatctaatttattttggttgtgtacatctggttaataacattttgctttttct |
268 |
Q |
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| T |
5317739 |
tgggacatttaatatctaatttattttggttgtgtacatctggttaataacattttgctttttct |
5317803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 4 - 187
Target Start/End: Complemental strand, 5328072 - 5327898
Alignment:
| Q |
4 |
acatcaagttagataagaacaaatggacttcaagcttgacttatactgcagcattcttccctgtcagcatatttgcaatgatgcagttccctttatacgt |
103 |
Q |
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|||||||||||||||||| |||||||| ||||| |||||| ||||||||| ||||| ||||| || |||||||||||||||||| ||||||| || |
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| T |
5328072 |
acatcaagttagataagagcaaatggagttcaa------cttatagtgcagcatttttccccgtcagtatttttgcaatgatgcagttcactttatatgt |
5327979 |
T |
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| Q |
104 |
tgctatgaaaggatgtgtggtttcactccttaggggacttaagaagattgttcctcgtttcttcctcaatttgatcaaaaggag |
187 |
Q |
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| T |
5327978 |
tgccatgaaaggatgtcttatggcactccttaggagccttaagaagattgttcctcgt---ttactcaagttgatcaaaaggag |
5327898 |
T |
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