View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7313_low_1 (Length: 814)
Name: NF7313_low_1
Description: NF7313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7313_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 657; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 11 - 797
Target Start/End: Complemental strand, 42135177 - 42134392
Alignment:
| Q |
11 |
agatggacatcaatactttggagcattgttttttactctaatgactatgatgtttaatgggcattgtgaacaagcaatgattgttgacaaacttcctgtt |
110 |
Q |
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| T |
42135177 |
agatggacaaaaatactttggagcattgttttttactctaatgactatgatgtttaatgggcattgtgaacaagcaatgattgttgacaaacttcctgtt |
42135078 |
T |
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| Q |
111 |
ttttacaaacaaagggatttcatgttctttcctgcatgggccttcggtttgcctcaatggcttataagaatcccaatttcatttattgaaccaaccattt |
210 |
Q |
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| T |
42135077 |
ttttacaaacaaagggatttcatgttctttcctgcatgggccttcggtttgcctcaatggcttataagaatcccaatttcatttattgaaccaaccattt |
42134978 |
T |
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| Q |
211 |
gggttctgcttacatactatacaattggatttgctccatcacctagcaggtagtacttcattttatcacgcgaaatcactactnnnnnnngtttaatttc |
310 |
Q |
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| T |
42134977 |
gggttctgcttacatactatacaattggatttgctccatcacctagcaggtagtacttcattttatcacgcgaaatcactactaaaaaaagtttaatttc |
42134878 |
T |
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| Q |
311 |
cgataaatattagattcaggaaaattaataattttgtcgcaagggtggacacatttttaattcaacannnnnnnnnagcagtgttgattgttgtgaaaaa |
410 |
Q |
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| T |
42134877 |
cgataaatattagagtcaggaaaattaataattttgtcgcaagggtggacacatttttaattcaacatttttttttagcagtgttgattgttgtgagaaa |
42134778 |
T |
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| Q |
411 |
cctaataaaactacnnnnnnnnnnnnnnnnnnngtaggctttgattgtgataatagtttgttctttaatttatacttatactattttcctttgtgcagat |
510 |
Q |
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| T |
42134777 |
cctaataaaactactttttgatttactttttt-gtaggctttgattgtgataatagtttgttctttaatttatacttatactattttcctttgtgcagat |
42134679 |
T |
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| Q |
511 |
tttttcgacattatctgttatgtgttagcgttcacaatatggctgttgctctattccgacttgttggtgcaattggtagaacacaagttgtttcaaatat |
610 |
Q |
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| T |
42134678 |
tttttcgacattatctgttatgtgttagcgttcacaatatggctgttgctctattccgacttgttggtgcaattggtagaacacaagttgtttcaaatat |
42134579 |
T |
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| Q |
611 |
tctagctggtatggcctatcaaattatatttgttcttggaggatttatcgtctctagaggtaaaatacatcattttaatttccatcatttagagatccta |
710 |
Q |
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| T |
42134578 |
tctagctggtatggcctatcaaattatatttgttcttggaggatttatcgtctctagaggtaaaatacatcattttaatttccatcatttagagatccta |
42134479 |
T |
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| Q |
711 |
tagtttaagggaactctaaattttcttaatatagcatgttaattttctacctttttgttgtcatatcttatgattttatcaaattct |
797 |
Q |
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| T |
42134478 |
tagtttaagggaactctaaattttcttaatatagcatgttaattttctacctttttgttttcatatcttatgattttatcaaattct |
42134392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 151
Target Start/End: Complemental strand, 42156166 - 42156117
Alignment:
| Q |
102 |
cttcctgttttttacaaacaaagggatttcatgttctttcctgcatgggc |
151 |
Q |
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| T |
42156166 |
cttcctgtgttctataaacaaagggatttcatgttttatcctgcatgggc |
42156117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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